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[hdf5] Build error on x64-windows #42848

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derossm opened this issue Dec 21, 2024 · 1 comment
Open

[hdf5] Build error on x64-windows #42848

derossm opened this issue Dec 21, 2024 · 1 comment

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@derossm
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derossm commented Dec 21, 2024

Package: hdf5[core,szip,zlib]:[email protected]#3

Host Environment

  • Host: x64-windows
  • Compiler: MSVC 19.43.34618.0
  • vcpkg-tool version: 2024-12-09-1005b78fa1bf1dde1a20c2734cba4ea61ca94d9a
    vcpkg-scripts version: f06267d 2024-12-21 (10 hours ago)

To Reproduce

vcpkg install hdf5

Failure logs

-- Using cached HDFGroup-hdf5-hdf5_1.14.4.3.tar.gz.
-- Cleaning sources at F:/dev/vcpkg/buildtrees/hdf5/src/5_1.14.4.3-7f241d6199.clean. Use --editable to skip cleaning for the packages you specify.
-- Extracting source F:/dev/vcpkg/downloads/HDFGroup-hdf5-hdf5_1.14.4.3.tar.gz
-- Applying patch hdf5_config.patch
-- Applying patch add-_Float16-type-on-aarch64.patch
-- Applying patch pkgconfig-requires.patch
-- Using source at F:/dev/vcpkg/buildtrees/hdf5/src/5_1.14.4.3-7f241d6199.clean
-- Found external ninja('1.12.1').
-- Configuring x64-windows-rel
-- Building x64-windows-rel
CMake Error at scripts/cmake/vcpkg_execute_build_process.cmake:134 (message):
    Command failed: F:/dev/vcpkg/downloads/tools/cmake-3.30.1-windows/cmake-3.30.1-windows-i386/bin/cmake.exe --build . --config Release --target install -- -v -j8
    Working Directory: F:/dev/vcpkg/buildtrees/hdf5/x64-windows-rel
    See logs for more information:
      F:\dev\vcpkg\buildtrees\hdf5\install-x64-windows-rel-out.log

Call Stack (most recent call first):
  installed/x64-windows/share/vcpkg-cmake/vcpkg_cmake_build.cmake:74 (vcpkg_execute_build_process)
  installed/x64-windows/share/vcpkg-cmake/vcpkg_cmake_install.cmake:16 (vcpkg_cmake_build)
  ports/hdf5/portfile.cmake:79 (vcpkg_cmake_install)
  scripts/ports.cmake:196 (include)
F:\dev\vcpkg\buildtrees\hdf5\install-x64-windows-rel-out.log 
Change Dir: 'F:/dev/vcpkg/buildtrees/hdf5/x64-windows-rel'

Run Build Command(s): "C:/Program Files/Microsoft Visual Studio/2022/Preview/Common7/IDE/CommonExtensions/Microsoft/CMake/Ninja/ninja.exe" -v -v -j8 install
[1/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5build_settings.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src\H5build_settings.c
[2/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5dbg.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5dbg.c
[3/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5mpi.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5mpi.c
[4/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5timer.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5timer.c
[5/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5checksum.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5checksum.c
[6/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5system.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5system.c
[7/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5.c
[8/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5Abtree2.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5Abtree2.c
[9/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5Adeprec.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5Adeprec.c
[10/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5A.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5A.c
[11/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5Adense.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5Adense.c
[12/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5Aint.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5Aint.c
[13/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5Atest.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5Atest.c
[14/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5AC.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5AC.c
[15/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5ACdbg.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5ACdbg.c
[16/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5ACmpio.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5ACmpio.c
[17/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5ACproxy_entry.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5ACproxy_entry.c
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[341/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_hl_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fohl\src\CMakeFiles\hdf5_hl-shared.dir\H5IM.c.obj /Fdhl\src\CMakeFiles\hdf5_hl-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\hl\src\H5IM.c
[342/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_hl_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fohl\src\CMakeFiles\hdf5_hl-shared.dir\H5DS.c.obj /Fdhl\src\CMakeFiles\hdf5_hl-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\hl\src\H5DS.c
[343/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_hl_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fohl\src\CMakeFiles\hdf5_hl-shared.dir\H5LTanalyze.c.obj /Fdhl\src\CMakeFiles\hdf5_hl-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\hl\src\H5LTanalyze.c
[344/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5Zscaleoffset.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5Zscaleoffset.c
[345/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_hl_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fohl\src\CMakeFiles\hdf5_hl-shared.dir\H5PT.c.obj /Fdhl\src\CMakeFiles\hdf5_hl-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\hl\src\H5PT.c
[346/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_hl_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fohl\src\CMakeFiles\hdf5_hl-shared.dir\H5LTparse.c.obj /Fdhl\src\CMakeFiles\hdf5_hl-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\hl\src\H5LTparse.c
[347/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_hl_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fohl\src\CMakeFiles\hdf5_hl-shared.dir\H5LD.c.obj /Fdhl\src\CMakeFiles\hdf5_hl-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\hl\src\H5LD.c
[348/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_hl_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fohl\src\CMakeFiles\hdf5_hl-shared.dir\H5TB.c.obj /Fdhl\src\CMakeFiles\hdf5_hl-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\hl\src\H5TB.c
[349/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_hl_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fohl\src\CMakeFiles\hdf5_hl-shared.dir\H5LT.c.obj /Fdhl\src\CMakeFiles\hdf5_hl-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\hl\src\H5LT.c
[350/353] C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\cl.exe   -DH5_BUILT_AS_DYNAMIC_LIB -D_BIND_TO_CURRENT_VCLIBS_VERSION=1 -D_CONSOLE -D_CRT_NONSTDC_NO_DEPRECATE -D_CRT_SECURE_NO_DEPRECATE -D_CRT_SECURE_NO_WARNINGS -Dhdf5_shared_EXPORTS -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src -IF:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5FDsubfiling -IF:\dev\vcpkg\buildtrees\hdf5\x64-windows-rel\src -IF:\dev\vcpkg\installed\x64-windows\include /nologo /DWIN32 /D_WINDOWS /utf-8 /MP  -wd5105 /MD /O2 /Oi /Gy /DNDEBUG /Z7  -MD /W3 /wd4100 /wd4706 /wd4127 /showIncludes /Fosrc\CMakeFiles\hdf5-shared.dir\H5Ztrans.c.obj /Fdsrc\CMakeFiles\hdf5-shared.dir\ /FS -c F:\dev\vcpkg\buildtrees\hdf5\src\5_1.14.4.3-7f241d6199.clean\src\H5Ztrans.c
[351/353] C:\WINDOWS\system32\cmd.exe /C "cd . && F:\dev\vcpkg\downloads\tools\cmake-3.30.1-windows\cmake-3.30.1-windows-i386\bin\cmake.exe -E vs_link_dll --intdir=src\CMakeFiles\hdf5-shared.dir --rc=C:\PROGRA~2\WI3CF2~1\10\bin\100261~1.0\x64\rc.exe --mt=C:\PROGRA~2\WI3CF2~1\10\bin\100261~1.0\x64\mt.exe --manifests  -- C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\link.exe  @CMakeFiles\hdf5-shared.rsp  /out:bin\hdf5.dll /implib:bin\hdf5.lib /pdb:bin\hdf5.pdb /dll /version:310.4 /machine:x64 /nologo /DEBUG /INCREMENTAL:NO /OPT:REF /OPT:ICF && cd ."
FAILED: bin/hdf5.dll bin/hdf5.lib 
C:\WINDOWS\system32\cmd.exe /C "cd . && F:\dev\vcpkg\downloads\tools\cmake-3.30.1-windows\cmake-3.30.1-windows-i386\bin\cmake.exe -E vs_link_dll --intdir=src\CMakeFiles\hdf5-shared.dir --rc=C:\PROGRA~2\WI3CF2~1\10\bin\100261~1.0\x64\rc.exe --mt=C:\PROGRA~2\WI3CF2~1\10\bin\100261~1.0\x64\mt.exe --manifests  -- C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\link.exe  @CMakeFiles\hdf5-shared.rsp  /out:bin\hdf5.dll /implib:bin\hdf5.lib /pdb:bin\hdf5.pdb /dll /version:310.4 /machine:x64 /nologo /DEBUG /INCREMENTAL:NO /OPT:REF /OPT:ICF && cd ."
LINK: command "C:\PROGRA~1\MICROS~4\2022\Preview\VC\Tools\MSVC\1443~1.346\bin\Hostx64\x64\link.exe @CMakeFiles\hdf5-shared.rsp /out:bin\hdf5.dll /implib:bin\hdf5.lib /pdb:bin\hdf5.pdb /dll /version:310.4 /machine:x64 /nologo /DEBUG /INCREMENTAL:NO /OPT:REF /OPT:ICF /MANIFEST:EMBED,ID=2" failed (exit code 1120) with the following output:
   Creating library bin\hdf5.lib and object bin\hdf5.exp
H5Z.c.obj : error LNK2019: unresolved external symbol SZ_encoder_enabled referenced in function H5Z_init

H5Zszip.c.obj : error LNK2019: unresolved external symbol SZ_BufftoBuffCompress referenced in function H5Z__filter_szip

H5Zszip.c.obj : error LNK2019: unresolved external symbol SZ_BufftoBuffDecompress referenced in function H5Z__filter_szip

bin\hdf5.dll : fatal error LNK1120: 3 unresolved externals

ninja: build stopped: subcommand failed.
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derossm commented Dec 21, 2024

There seems to be a library called 'szip' missing from dependencies for hdf5, and szip doesn't seem to have a vcpkg port; szip seems to be made by the same developers as hdf5 (US Army Engineer Research and Development Center or ERDC).

By default, install hdf5 turns into hdf5[core,szip,zlib].

The last working version installed with vcpkg was hdf5[core,cpp,szip,zlib]:[email protected]#2 and the current version that fails when linking during build is [email protected]#3 (so a change from ending with .3#2 to .4#3)

Note: install hdf5[core,cpp,szip,zlib] doesn't fix the issue and szip doesn't seem to be optional (and was previously working as part of hdf5[core,cpp,szip,zlib]:[email protected]#2).

I hope any of that helps.

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