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There should be a option like mirtop convert --format sql to convert a mirgff3 file into a table inside a sqlite database.
We can start with creating a script that takes a mirgff3 file and converts to sqlite file. Ideally we should keep all the information, I think the output of mirtop counts --add-extra would be a good table to directly add in a sqlite database file.
After that:
integrate the script in the mirtop code
add test units
start with filter or/and query function from the database
The text was updated successfully, but these errors were encountered:
There should be a option like
mirtop convert --format sql
to convert a mirgff3 file into a table inside a sqlite database.We can start with creating a script that takes a mirgff3 file and converts to sqlite file. Ideally we should keep all the information, I think the output of
mirtop counts --add-extra
would be a good table to directly add in a sqlite database file.After that:
filter
or/andquery
function from the databaseThe text was updated successfully, but these errors were encountered: