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support gzip'd input fasta #38

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nick-youngblut opened this issue Apr 25, 2022 · 1 comment
Open

support gzip'd input fasta #38

nick-youngblut opened this issue Apr 25, 2022 · 1 comment

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@nick-youngblut
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Running SibeliaZ v1.2.4 on gzip'ed input fasta files results in the following error:

Error: The FASTA header should start with a '>', started with ''
Loading the graph...
error: Can't read the input file

Given that the user will almost definitely have their genome fasta files gzip'ed if they have 100's or 1000's (or more), it would be great if SibeliaZ supported gzip'ed (and maybe bzip2) compressed input.

@iminkin
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iminkin commented Apr 25, 2022

Hi,

Thank you for the suggestion! I will include it in the next release.

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