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Large genome files #29
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Hi @elissaralam , yes SibeliaZ was developed for handling larger datasets. |
Hello, Thank you for your quick response! SibeliaZ worked perfectly well in generating a global alignment for my two genomes. However, i am trying to generate a gfa file from the maf file using the function "python maf_to_gfa1.py" but i am constantly getting an IndexError "IndexError: list index out of range". Have you encountered this before? Thank you for your help, |
Hi Elissar, Sorry, but it seems to be a bug in my code. Is it possible for you to share the input and output files you have so that I can try to debug the script? Ilia |
I'm also trying to align two large genome files (~840Mbp) of the same species and got the same error with maf_to_gfa1.py. this is the full error message:
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Hello,
I have two large genome files and would like to use SibeliaZ. I recently read this on a biostars thread "Yes, by SibeliaZ you can get .gfa file out of a fasta file. They recently updated there old version and now large genome file can also be used for the same."
But I cannot find any confirmation that SibeliaZ supports large genome files in your version history. Can you confirm that?
Thanks a lot!
Elissa
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