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twopaco: error while loading shared libraries: libtbb.so.2: cannot open shared object file: No such file or directory #28
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Hi @Karimi-81 , do you have root privileges on the machine you are using? |
In the meanwhile, I found a similar issue with another project. Could you try a solution described there, i.e. downgrading tbb by running
? Link to the thread: https://www.biostars.org/p/494922/ |
Thank you. The suggested solution worked well. Now, program runs smoothly.
Best,
========================================
Karim Karimi
Ph.D in Animal Breeding & Genetics
Postdoctoral Fellowship in Mink Genomics
Department of Animal Science and Aquaculture
Dalhousie University
Tel: (902) 814 4442
…________________________________
From: Ilia Minkin ***@***.***>
Sent: Saturday, May 22, 2021 1:49 PM
To: medvedevgroup/SibeliaZ ***@***.***>
Cc: Karim Karimi ***@***.***>; Mention ***@***.***>
Subject: Re: [medvedevgroup/SibeliaZ] twopaco: error while loading shared libraries: libtbb.so.2: cannot open shared object file: No such file or directory (#28)
CAUTION: The Sender of this email is not from within Dalhousie.
In the meanwhile, I found a similar issue with another project. Could you try a solution described there?
https://www.biostars.org/p/494922/
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Sorry to interrupt you again. I got another error:
|
Hi there,
I used conda to install the sibeliaz:
conda install -c bioconda sibeliaz
However, I tried to run the program, I encountered with following error:
(base) -bash-4.2$ sibeliaz assembly_mini.fasta
Constructing the graph...
twopaco: error while loading shared libraries: libtbb.so.2: cannot open shared object file: No such file or directory
TwoPaco: 0.00 seconds elapsed, 216 KB memory used
Loading the graph...
error: Can't read the input file
SibeliaZ-LCB: 0.05 seconds elapsed, 2048 KB memory used
rm: cannot remove './sibeliaz_out/de_bruijn_graph.dbg': No such file or directory
bash: global_alignment: command not found
Alignment: 0.05 seconds elapsed, 1724 memory used
Is this issue related to installation of required libraries. Do you have any idea to solve the problem.
Thank you
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