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I could get the sibeliaz command running fine on a node directly, but when I try to send the job using sbatch or snakemake --profile, I got errors.
When use the sbatch the error is :
.conda/envs/sibeliaz/bin/sibeliaz: line 97: total_size + : syntax error: operand expected (error token is "+ ")
.conda/envs/sibeliaz/bin/sibeliaz: line 125: /usr/bin/time: No such file or directory
.conda/envs/sibeliaz/bin/sibeliaz: line 126: /usr/bin/time: No such file or directory
when use the snakemake --profile, the error is:
.snakemake_envs/3f9a8e3309e4f8576c8c3c7e6cd22727/bin/sibeliaz: line 131: /usr/bin/time: No such file or directory
.snakemake_envs/3f9a8e3309e4f8576c8c3c7e6cd22727/bin/sibeliaz: line 132: /usr/bin/time: No such file or directory
Maybe some hardcoded codes cause this error? How can I make SibeliaZ work with clusters?
The text was updated successfully, but these errors were encountered:
Hi,
I could get the sibeliaz command running fine on a node directly, but when I try to send the job using sbatch or snakemake --profile, I got errors.
When use the sbatch the error is :
when use the snakemake --profile, the error is:
Maybe some hardcoded codes cause this error? How can I make SibeliaZ work with clusters?
The text was updated successfully, but these errors were encountered: