Dockerfile

## pplacer-build
## Build pplacer from source

FROM ubuntu:14.04

RUN apt -y update
RUN apt -y --force-yes install \
  git \
  camlp4-extra=4.01.0-3ubuntu3.1 \
  gawk=1:4.0.1+dfsg-2.1ubuntu2 \
  libgsl0-dev=1.16+dfsg-1ubuntu1 \
  zlib1g=1:1.2.8.dfsg-1ubuntu1 \
  zlib1g-dev=1:1.2.8.dfsg-1ubuntu1 \
  m4=1.4.17-2ubuntu1 \
  wget=1.15-1ubuntu1.14.04.5 \
  ocaml=4.01.0-3ubuntu3.1 \
  patch=2.7.1-4ubuntu2.4 \
  build-essential=11.6ubuntu6 \
  pkg-config=0.26-1ubuntu4 \
  unzip=6.0-9ubuntu1.5 \
  sqlite3=3.8.2-1ubuntu2.2 \
  libsqlite3-dev=3.8.2-1ubuntu2.2 \
  python=2.7.5-5ubuntu3 \
  zip=3.0-8

RUN wget https://raw.githubusercontent.com/ocaml/opam/1.3.1/shell/opam_installer.sh -O - \
  | sh -s /usr/local/bin
RUN ln -s /usr/local/bin/opam /usr/bin/opam && /usr/local/bin/opam init -y
RUN opam repo add pplacer-deps http://matsen.github.io/pplacer-opam-repository \
  && opam update pplacer-deps \
  && eval `opam config env`
RUN opam install -y depext.1.0.5 \
  && opam depext -y \
  csv.1.6 \
  ounit.2.0.8 \
  xmlm.1.2.0 \
  mcl.12-068oasis4 \
  batteries.2.8.0 \
  ocaml-gsl.0.6.3 \
  sqlite3.4.1.3 \
  camlzip.1.05 \
  && opam install -y \
  csv.1.6 \
  ounit.2.0.8 \
  xmlm.1.2.0 \
  mcl.12-068oasis4 \
  batteries.2.8.0 \
  ocaml-gsl.0.6.3 \
  sqlite3.4.1.3 \
  camlzip.1.05

RUN mkdir /pplacer && mkdir /pplacer/src && mkdir /data
WORKDIR /pplacer/src
COPY ./ /pplacer/src/

RUN eval $(opam config env) && make
RUN cp /pplacer/src/bin/* /usr/local/bin
WORKDIR /pplacer/src/bin/
RUN zip /pplacer.zip *
WORKDIR /pplacer/src/
RUN zip /pplacer.zip ./scripts/*
WORKDIR /pplacer/src/scripts
RUN python setup.py install

# WORKDIR /pplacer/
# RUN zip /pplacer.zip -r src

WORKDIR /data
# RUN rm -r /pplacer/src/