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<!DOCTYPE HTML PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en">
<head>
<title>CV | Mahboobeh(Mariya) Golchinpour- leili</title>
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<meta name="description" content="Graduate Student in Computational Linguistics" />
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<div class="fixedmenu">
<div class="activeitem"><a href="#home">Mahboobeh (Mariya) Golchinpour- leili</a></div>
<div class="item"><a href="#education">Education</a></div>
<div class="item"><a href="#Courses">Courses</a></div>
<div class="item"><a href="#BioinformaticSkills">BioinformaticSkills</a></div>
<div class="item"><a href="#publication">Publication</a></div>
<div class="item"><a href="#skills">Skills</a></div>
</div>
<div id="home" style="margin:auto; text-align: center; color:black;">
<img src="img/Mahboobeh(Mariya) Golchinpour- leili.jfif" style="border-radius: 50%;" height="200"/>
</div>
<div class="container">
<div>
<h1>Mahboobeh (Mariya) Golchinpour-leili</h1>
<div style="text-align:center; color:black;"><br><br>
<p>
<strong>I am a Bioinformatics Ph.D. candidate at the University of Tehran, working with
<a href="https://scholar.google.com/citations?user=9d4ufiwAAAAJ&hl=en">Dr. Alireza Fotuhi Siahpirani</a>
at the Laboratory of Bioinformatics & Computational Genomics <a href="https://lbcg.ut.ac.ir/">(LBCG Lab)</a>.
Currently, my research is centered on Gene Regulation, with a specific emphasis on the functions of Transcription Factors (TFs) and Enhancers.</strong>
</p>
</div>
</div>
<div>
<br>
<ul style="list-style: none; display: flex; padding: 0; font-weight: bold;">
<li style="margin-right: 10px;"><a href="https://www.linkedin.com/in/mariyagolchinpour/">LinkedIn</a></li>
<li style="margin-right: 10px;"><a href="https://github.com/mariyagolchin">GitHub</a></li>
<li style="margin-right: 10px;"><a href="https://www.youtube.com/@mariyagolchin">YouTube</a></li>
<li style="margin-right: 10px;"><a href="https://scholar.google.com/citations?hl=en&user=5tABF_IAAAAJ&view_op=list_works&gmla=AH70aAXmCBTgyig3V1Oajy0fXZsrkMW1DnPRv6gzYX5mRbwsarCWv99J3T30j9yvv5ENj2ZGjNOTI02bqq7IGMb-">Publications</a></li>
<li style="margin-right: 10px;"><a href="https://www.researchgate.net/profile/Mahboobeh-Golchinpour-Leili">ResearchGate</a></li>
<li><a href="mailto:[email protected]">Email</a></li>
</ul>
</div>
</div>
<h2 id="education">Education</h2>
<h3>PhD Student in Bioinforrmatics<small>Institute of Biochemistry and Biophysics, University of Tehran, Iran.</small></h3>
<p><b>Thesis:</b> “Gene Regulation” (Advisor: Dr. Alireza Fotuhi Siahpirani <a href="https://scholar.google.com/citations?hl=en&user=9d4ufiwAAAAJ&view_op=list_works&sortby=pubdate">google scholar link </a>)</p>
<p><b>Lab:</b>Laboratory of Bioinformatics & Computational Genomics <a href="https://lbcg.ut.ac.ir/">(lbcg Lab)</a></p>
<p><b>Courses: </b>Special Topics in Bioinformatics, Computational Drug Design, Genomics and Gene Regulation, Modeling Metabolic Networks, Algorithms in Bioinformatics, Advanced Bioinformatics,
Biological Databases, Seminar in Bioinformatics</p>
<p><b> Cumulative GPA: </b>18.60 </p>
<h3>M.Sc. in Information Technology Engeeniering, Network Science <small>University of Tehran, Iran.</small></h3>
<p><b>Thesis:</b> “Persian Plagiarism Detection Base On Word2vec” (Advisor: Dr. Hadi Veisi <a href="https://scholar.google.com/citations?user=Jf6cd6UAAAAJ&hl=en">google scholar link </a>)</p>
<p><b>Lab:</b>Data and Signal Processing Lab (DSP Lab) <a href="https://dsp.ut.ac.ir/">DSP Lab</a></p>
<p><b>Courses:</b> Computational Linguistics, Complex network</p>
<h2>Research interests</h2>
<ul>
<li>Bioinformatics, especially Gene Regulation</li>
<li>Machine Learning</li>
<li> Natural Language Processing</li>
</ul>
<h2>Presentations</h2>
<ul>
<li><b>Seminar Presentation: Predicting transcription factor binding site by deep learning</b></li>
<iframe width="560" height="315" src="https://www.youtube.com/embed/GG5MqM1P8ss?si=Gblv5gQ4tvn_lhDY" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
</ul>
<ul>
<li><b>Feature selection presentation, course: DrugDiscovery projects, Instructor: Dr. Gharaghani</b></li>
<iframe width="560" height="315" src="https://www.youtube.com/embed/pYi_DA83Jns?si=YZwQPmrDRwkQfw1r" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
</ul>
<h2 id="Courses">Courses</h2>
<ul>
<li><b><a href="https://www.coursera.org/account/accomplishments/verify/JUUKP7ENEH9N">Supervised Machine Learning: Regression and Classification</a>(Coursera)</b></li>
<li><b><a href="https://www.coursera.org/account/accomplishments/certificate/M322T3A4Z734"> Introduction to Data Science and scikit-learn in Python</a>(Coursera)</b></li>
<li><b><a href="https://www.coursera.org/account/accomplishments/certificate/F7NZ92TH8MNH"> Machine Learning Models in Science</a>(Coursera)</b></li>
<li><b><a href="https://www.coursera.org/account/accomplishments/certificate/WV2BXY38C8TS"> Python for Genomic Data Science</a>(Coursera)</b></li>
<li><b><a href="https://www.coursera.org/account/accomplishments/certificate/YAJN743C3YR6"> Algorithms for DNA Sequencing</a>(Coursera)</b></li>
<li><b><a href="https://www.coursera.org/account/accomplishments/certificate/MBV9GJ9DFA6Z"> Introduction to Genomic Technologies</a>(Coursera)</b></li>
<li><b><a href="https://github.com/mariyagolchin/mariyagolchin.github.io/blob/main/img/Huawei_seeds%20for%20the%20future-Mahboobeh(Mariya)%20Golchinpour-%20leili.PNG"> Huawei's Seeds for the Future Program</a>(Huawei)</b></li>
</ul>
<h2 id="BioinformaticSkills"> Bioinformatic Skills</h2>
<ul>
<p>A list of bioinformatic datasets and tools that I have experience analyzing and employing.</p>
<br><b>Data Analysis: </b>RNA-seq, phylogenetic trees, Differential gene expression analysis
<br><b>Software Knowledge: </b>FastQC,Trimmomatic, Hisat2, Samtools, Htseq-coun, BEDTools, MAFFT, RAxML-NG, Picard
<br><b>R packages:</b> maftools, edgeR, Phangorn, Tidyverse
<br><b>Programming Languages:</b> R, Python, Bash scripting, Git, GitLab and GitHub
<br><b>Databases: </b> Ncbi, JASPAR, GRASP (Genome-Wide Repository of Associations between SNPs and Phenotypes), ENCODE, Cistrome, GTEx (Genotype-Tissue Expression)
</p>
</ul>
<h2 id="Projects1"> Projects </h2>
<h3> Mathematical Foundations of Bioinformatics Projects (Link to GitHub)</h3>
<li><b><a href="https://github.com/mariyagolchin/MFB-R-Programming-1">MFB-R-Programming-1</a></b></li>
<li><b><a href="https://github.com/mariyagolchin/MFB-R-Programming-2">MFB-R-Programming-2</a></b></li>
<li><b><a href="https://github.com/mariyagolchin/MFB-R-Programming-4">MFB-R-Programming-4</a></b></li>
<li><b><a href="https://github.com/mariyagolchin/Mathematical-Foundations-of-Bioinformatics_TA1_Programming">MFoundations of Bioinformatics TA1_Programming</a></b></li>
<li><b><a href="https://github.com/mariyagolchin/Mathematical-Foundations-of-Bioinformatics_TA2_Programming">Mathematical Foundations of Bioinformatics TA2_Programming</a></b></li>
<h3></h3> Bioinformatics Algorithms Projects (Link to GitHub)</h3>
<li><b><a href="https://github.com/mariyagolchin/Read-mapping-and-genome-assembly">Read mapping and genome assembly</a></b></li>
<li><b><a href="https://github.com/mariyagolchin/RNA-Seq-analysis">RNA-seq analysis</a></b></li>
<li><b><a href="https://github.com/mariyagolchin/Learning-phylogenetic-trees-from-multiple-sequence-alignment-of-the-COVID-data">Learning phylogenetic trees from multiple sequence alignment of the COVID data</a></b></li>
<br>
<li><b><a href="https://github.com/mariyagolchin/A-Primer-on-Deep-Learning-in-Genomics">A Primer on Deep Learning in Genomics (Nature Genetics)</a></b></li>
</ul>
<h2 id="publication">Publication</h2>
<ul>
<h3>Journal Papers:</h3>
<li><b><a href="https://scholar.google.com/citations?view_op=view_citation&hl=en&user=5tABF_IAAAAJ&citation_for_view=5tABF_IAAAAJ:hqOjcs7Dif8C">Multi-level text document similarity estimation and its application for plagiarism detection</a></b><div class="by"><u>mahboobeh golchinpour </u>, Hadi Veisi</div></li>
<h3>Conference Papers:</h3>
<li><b><a href="">Persian Plagiarism Detection Using Word Vectors</a></b>9th International Conference on Information and Knowledge Technology(IKT 2017), Tehran. (Accepted)</div></li></li>
</ul>
<h2 id="Conference Attendance">Conference Attendance</h2>
<ul>
Certificate of Participation in "The 12th National Conference and the 3rd International Bioinformatics Conference"
<img src="img/BioinformaticsConference.PNG" alt="BioinformaticsConference.png" width="560" height="400">
</ul>
<h2 id="skills"> Skills</h2>
<ul>
<p>R, Python</p>
<h3>Web Development</h3>
<p>JavaScript, XML, JSON</p>
<h3>Machine Learning</h3>
<p> TensorFlow, PyTorch, Keras</p>
<h3>Office</h3>
<p>Latex, Word, Excel, PowerPoint, Photoshop</p>
<h3>Language Skills</h3>
</ul>
</ul>
</ul>
<div class="footer">
<p>2023 <a href="https://github.com/mariyagolchin/mariyagolchin.github.io/">mariya golchinpour</a></p>
</div>
</body>
</html>