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Revision History

This file was last revised on 2024-11-18. Please keep this note updated.

15.0.1-SNAPSHOT

  • Current snapshot

15.0

  • ChainExecutor.andThen() added (to be tested).
  • StreamUtils.sampleStream() added.
  • uk.ac.ebi.utils.statistics.FisherExact imported from the USeq project.
  • CollectionsUtils, adding functions to copy collections and making them read-only (to be tested, but used in tested dependants).
  • JacksonJsUtils added.
  • ReactorUtils added.
  • XResponseEntityExceptionHandler added.
  • Many dependency and Maven plug-in upgrades.

14.0.1

  • Various dependency upgrades.

14.0

  • CollectionsUtils added.
  • Xvalidate added.
  • Some old classes removed: Pair.
  • the uk.ac.ebi.utils.threading.batchproc package has been deprecated, since the same functionality is offered by Project Reactor. Example.

13.0

  • These migrations are incompatible with older versions:
    • javax.servlet-api migrated to jakarta.servlet-api.
    • spring-web moved to 6.0.

12.0

  • Migration to Java 17. No backward compatibility guaranteed.

11.1.1

  • Minor bug in ExceptionUtils fixed (#ea6e7d8).

11.1 (TODO)

  • WARNING: Maven repository migrated to my personal artifactory.
  • Minor fix in the batch processors (more processors made abstract, #3e97258).
  • ListUtils.getRow() added.
  • ServletUtils added.

11.0.1

  • Various dependencies upgraded

Bugfixes:

11.0

  • Big refactoring: previous split into multiple jutils-xxx modules removed, now there is only one Maven project, with optional dependencies (see the POM).
  • YAMLLoader added, to manage configurations.
  • ConfigBootstrapWebListener added.
  • More exceptions added to uk.ac.ebi.utils.opt.net.exceptions
  • ExceptionUtils, methods like <build|throw>Ex() are able to accept $cause in the message template.
  • ExceptionLogger added.
  • ListUtils.union() added.
  • RegEx, pattern-based cached instances added for efficiency.

If not otherwise specified, items refer to the base module (jutils).

10.0

  • FROM NOW ON, JDK < 11 IS NO LONGER SUPPORTED. jutils will possibly work with 1.8 for a while (until we start introducing incompatible changes), but that's not officially supported.
  • Repository moved to a new place.
  • Class-based thread names in uk.ac.ebi.utils.threading.batchproc.BatchProcessor.
  • Helpers added to uk.ac.ebi.utils.memory to support the migration of the now-deprecated finalize() method.
  • OptionsMap and its default implementation added.
  • More variants added to IOUtils.readFiles().
  • uk.ac.ebi.utils.xml.stax.StaxUtils added.
  • (jutils-io) Adding serialization and string/file writing utils.
  • More exceptions added to uk.ac.ebi.utils.exceptions.
  • More helpers added to uk.ac.ebi.utils.exceptions.ExceptionUtils
  • LambdaUtils added.

9.1.1-SNAPSHOT

  • More variants added to IOUtils.readFiles()

9.1

  • Minor fixes/improvements to the batch processing package.

9.0

  • Big changes to uk.ac.ebi.utils.threading.BatchProcessor and related components, with clearer naming, better abstraction of the notion of batches their collection.
  • uk.ac.ebi.utils.runcontrol.ProgressLogger and percent logger added.
  • Additions to uk.ac.ebi.utils.exceptions.
  • uk.ac.ebi.utils.xml.XPathReader interface enhanced and unit-tested.
  • Additions to uk.ac.ebi.utils.string.StringSearchUtils.
  • Additions to uk.ac.ebi.utils.time.XStopWatch.
  • Javadocs (with Markdown support) added to the build.
  • (jutils-io) readFiles() methods added.
  • uk.ac.ebi.utils.exceptions.ExceptionUtils.ExceptionUtils now is able to generate wrapping exceptions even if the base one doesn't accept a cause (but there are caveats, see the Javadoc).

7.0

  • (jutils-io) uk.ac.ebi.utils.io.Unix4jUtils added.
  • (jutils-io) XmlFilterUtils added.
  • uk.ac.ebi.utils.threading.BatchProcessor added.
  • URI-related methods added to uk.ac.ebi.utils.ids.IdUtils (migrated from java2rdf).
  • TupleSpliterator added and used in StreamUtils.tupleStream(), to make the result parallelizable.
  • (jutils-io) IOUtils.readFile() added, deprecated method readInputFully removed.

6.0

  • Splitting the original jutils into multiple function and dependency-based modules.
  • TupleIterator and StreamUtils.tupleStream() added.

6.0, jutils-io

  • SSLUtils added.
  • New resource access methods added to IOUtils.

5.1

  • New hash functions added to IOUtils.
  • IOUtils.uri () and .url() added.
  • Extensions to BatchService, to allow for customisation, including task priority option.
  • Some useful general-purpose exceptions added in uk.ac.ebi.utils.exceptions.
  • ThreadedPipedWriter removed, didn't make much sense, use EasyStream instead (http://io-tools.sourceforge.net/easystream/index.html).

5.0

  • uk.ac.ebi.utils.runcontrol added.
  • MapCollection added.

4.5

  • Moving deployment to BioSD/GitHub repository.
  • Some improvements in BatchService.

4.4

  • Experimental migration of deployment to EBI/Nexus Maven repository.
  • XStopWatch fixed against new checkings in StopWatch (start() cannot be called twice, without reset()).
  • XStopWatch.restart() added.

4.3

  • Fix in MemoryUtils.checkMemory(), Runtime.maxMemory() used (instead of totalMemory()).
  • ReflectionUtils.invoke () added.

4.2

  • HqlUtils added.

4.1

  • ThreadedPipedWriter added.
  • XStopWatch added.
  • Minor changes.

4.0

  • BatchService and related classes added.
  • ArraySearchUtils added.
  • ExceptionUtils added.

3.0

  • SqlUtils added.
  • Minor bugfixing in tests.
  • JPA dependency upgraded to version 2.

2.0

  • SimpleCache added.
  • Many2ManyUtils and uk.ac.ebi.utils.orm package added.
  • RegEx.toString() now yields the pattern as in Pattern.
  • AlphaNumComparator now has an option for case-sensivity.

1.6

  • IOUtils.getMD5() generalised into getHash().
  • XPathReader, exception handling changed.

1.5

  • TestEntityMgrProvider added.
  • Very minor changes in comments.

1.4

  • Minor changes made. Version upgraded to reflect the policy of increasing the second revision number upon whole classes.
  • Minor methods additions and changes to existing code.

1.3.1

  • uk.ac.ebi.utils.collections.AlphaNumComparator added.
  • uk.ac.ebi.utils.test.junit.TestOutputDecorator is also a TestRule, so that it can be used on individual test classes, in case you already have many other classes with the same functionality already implemented.

1.3

  • uk.ac.ebi.utils.test.junit.TestOutputDecorator added.

1.2

  • StringBufferReader removed, Apache commons has CharSequenceReader in its place.
  • ISAPair renamed to Pair, to reflect its general-purpose nature.

1.1

  • StringBufferReader added, ISAPair added.

1.0

  • First version published as stand-alone package in Git.