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do_log.hoc
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do_log.hoc
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// Hoc code to read pDE log files
// assumes previous load_file( "eTrace-p.hoc" )
//================================================================================
begintemplate iGen
public fname, ngen, id, val, fit, best, median, mean, sd, cv, min, max, low, hi
public comp_flag, comp_val, iG_comp
strdef id, fname
objref iG_comp // comparison parm when comp_flag==1,3
proc init(){
fname = $s1
ngen = $2
id = $s3 // name of variable
val = $4
fit = 0 // assume it's a set variable
if( numarg() > 4 ){
fit = 1 // its a fit variable
best = $5
median = $6
mean = $7
sd = $8
cv = $9
min = $10
max = $11
low = $12
hi = $13
}
comp_flag = 0 // 0=no comparison
// comp_val = 0 // compare value
}
//----------------------------------------------------------------------
public copy
obfunc copy(){ local i localobj ig
ig = new iGen( fname, ngen, id, val, best, median, mean, sd, cv, min, max, low, hi )
ig.fit = fit
ig.comp_flag = comp_flag
// ig. comp_val = comp_val
return ig
}
endtemplate iGen
//================================================================================
begintemplate iParStat
public fname, ngen, id, val, fit, best, median, mean, sdr, cvr, sd, cv, min, max, low, hi
public comp_flag, comp_val, iG_comp
strdef id, fname
objref iG_comp // comparison parm when comp_flag==1,3
proc init(){
fname = $s1
ngen = $2
id = $s3 // name of variable
val = $4
fit = 0 // assume it's a set variable
if( numarg() > 4 ){
fit = 1 // its a fit variable
best = $5
median = $6
sdr = $7
cvr = $8
mean = $9
sd = $10
cv = $11
min = $12
max = $13
low = $14
hi = $15
}
comp_flag = 0 // 0=no comparison
// comp_val = 0 // compare value
}
//----------------------------------------------------------------------
public copy
obfunc copy(){ local i localobj ig
ig = new iParStat( fname, ngen, id, val, best, median, mean, sd, cv, min, max, low, hi )
ig.fit = fit
ig.comp_flag = comp_flag
// ig. comp_val = comp_val
return ig
}
endtemplate iParStat
//================================================================================
begintemplate pDE_log
public idebug, iPv, eF, pG, y_step, igL, pL_plot, pF, pN, ngen, vDiag, genN_ptrs
objref this, sf, iPv, eF, pG, igL, vB, pL_plot, pF, pN, vDiag, genN_ptrs
proc init(){
idebug = 0
tmp = 0
sf = new StringFunctions()
first_read_gen_parm_line = 1
y_step = 16
igL_order = 0 // order by 0=original 1=cv 2=comp_change
ngen = 0
pN = new Vector(2) // gen# of base and compare
pF = new str_obj() // log filename for base (s1) and compare (s2)
vDiag = new VBox()
}
//----------------------------------------------------------------------
public label_color
func label_color(){ local i, col localobj str, sf
str = new str_obj($s1)
sf = new StringFunctions()
col = 19
if( sf.head( str.s1, "Naf", str.s2 )> 0 ) col = 20
if( sf.head( str.s1, "Nap", str.s2 )> 0 ) col = 21
if( sf.head( str.s1, "KDR", str.s2 )> 0 ) col = 23
if( sf.head( str.s1, "KDRa", str.s2 )> 0 ) col = 24
if( sf.head( str.s1, "KDRb", str.s2 )> 0 ) col = 25
if( sf.head( str.s1, "KA", str.s2 )> 0 ) col = 26
if( sf.head( str.s1, "_h", str.s2 )> 0 && sf.head( str.s1, "Naf", str.s2 )< 0 && \
sf.head( str.s1, "KA", str.s2 )< 0 && sf.head( str.s1, "KDR", str.s2 )< 0 ) col = 27
return col
}
public load_colors
//----------------------------------------------------------------------
func load_colors(){
pG.color( 19, "lavender" )
pG.color( 20, "Tomato" )
pG.color( 21, "lightgreen" )
pG.color( 22, "Coral" )
pG.color( 23, "lightblue" )
pG.color( 24, "Cyan" )
pG.color( 24, "Aquamarine" )
pG.color( 25, "Khaki" )
pG.color( 26, "Goldenrod" )
pG.color( 27, "lightpink" )
return 27
}
public resort
func resort(){
igL_order=$1
plot_igL()
return $1
}
//----------------------------------------------------------------------
obfunc sort_igL(){ local i_order localobj iO, iOc
i_order = $1
iO = new Vector( igL.count ) // for sorting
if( igL_order==0 ) for i=0,igL.count-1 iO.x[i]=i
if( igL_order==1 ) {
iOc = new Vector( igL.count )
for i=0, iOc.size-1 iOc.x[i] = igL.o(i).cv
iO = iOc.sortindex()
}
if( igL_order==2 ) {
iOc = new Vector( igL.count )
for i=0, iOc.size-1 {
iOc.x[i] = 0
// if( igL.o(i).iG_comp.val != 0 ) iOc.x[i] = abs( 100*( igL.o(i).val/igL.o(i).iG_comp.val -1 ))
if( igL.o(i).val != 0 ) iOc.x[i] = abs( 100*( igL.o(i).iG_comp.val/igL.o(i).val -1 ))
}
iO = iOc.sortindex()
}
return iO
}
proc set_sorting(){ local i localobj pG, str
pG = $o1
pG.menu_action( "Sort by type", "resort(0)" )
pG.menu_action( "Sort by cv", "resort(1)" )
pG.menu_action( "Sort by %change", "resort(2)" )
}
//--------------------------------------------------------------------------------
public show_base_gen
func show_base_gen(){ local i, gM localobj str
str = new str_obj()
eF.chooser("r", "Select log file", "*.log" )
if( eF.chooser()){
ngen = gM = max_genN( eF.getname( str.s2 ) )
vDiag = new VBox()
vDiag.intercept(1)
xpanel( "Plot generation number" )
xlabel( str.sPrint( "logfile >>%s<<", str.s2 ).s1 )
xpvalue( str.sPrint("set gen? (0-%d)", gM).s1, &ngen, 0 )
sprint( str.s2, "read_n_plot(\"%s\", ngen )", str.s2, ngen )
xbutton( "plot it", str.s2 )
xbutton( "Cancel", "vDiag.unmap()" )
xpanel() // 1*pxl_cm, 1*pxl_cm )
vDiag.intercept(0)
vDiag.map( "diag", 1*pxl_cm, 1*pxl_cm, -1, -1 )
}
return 1
}
//--------------------------------------------------------------------------------
public compare_base_gen
func compare_base_gen(){ local i, gM localobj str
str = new str_obj()
eF.chooser("r", "Select log file to compare", "*.log" )
if( eF.chooser()){
ngen= gM = max_genN( eF.getname( str.s2 ) )
vDiag = new VBox()
vDiag.intercept(1)
xpanel( "Select generation number" )
xlabel( str.sPrint( "logfile >>%s<<", str.s2 ).s1 )
xpvalue( str.sPrint("select gen# (0-%d)", gM).s1, &ngen, 0 )
sprint( str.s2, "compare_n_plot(\"%s\", ngen )", str.s2, ngen )
xbutton( "compare them", str.s2 )
xbutton( "Cancel", "vDiag.unmap()" )
xpanel() // 1*pxl_cm, 1*pxl_cm )
vDiag.intercept(0)
vDiag.map( "diag", 1*pxl_cm, 1*pxl_cm, -1, -1 )
}
return 1
}
//----------------------------------------------------------------------
public read_n_plot
obfunc read_n_plot(){ local i localobj str, ig1, pL
pF.s1 = $s1
pN.x[0] = $2
pF.s2 = ""
pN.x[1] = -1
plot_igL( read_iGen( pF.s1, pN.x[0] ))
if( vDiag.ismapped() ) vDiag.unmap()
return pL_plot
}
//----------------------------------------------------------------------
public compare_n_plot
obfunc compare_n_plot(){ local i localobj str, igB, igC
pF.s2 = $s1
pN.x[1] = $2
igB = read_iGen( $s1, $2 )
plot_igL( compare_igL( igL, igB ))
if( vDiag.ismapped() ) vDiag.unmap()
return pL_plot
}
//--------------------------------------------------------------------------------
public plot_igL
obfunc plot_igL(){ local i, lW, xp, yp, yM, ncols, rdiff localobj iG, str, sf, eT, iO, iOc
if( numarg() > 0 ) igL = $o1
eT = new eTrace()
pG = new Graph()
load_colors()
str = new str_obj()
sf = new StringFunctions()
// Match plot scale to pixels on screen
pxl_cm = 100/2.7 // 37 pixels per cm
margin = 2.2/500*pxl_cm // pxls; cm per width_pxl * pxl_cm
y_step = 16 // pixels
yM = 50 // lines per column
pLabW = 3.8 * pxl_cm
pValW = 4 * pxl_cm
limW = 2 * pxl_cm
cValW = 0.8 * pxl_cm
compW = 5 *pxl_cm
ncols = int(igL.count/yM)+1
aWidth = pLabW + pValW + limW + cValW + compW
wWidth = (ncols * aWidth)*(1+margin)
pG.fixed( 1 )
//------------------------------
pG.unmap()
pL_plot = new VBox()
pL_plot.intercept(1)
xpanel( "read-gen", 1 )
xbutton( "plot base gen...", "show_base_gen()" )
xbutton( "compare to base gen...", "compare_base_gen()" )
xpanel()
pG.view( 0, 0, ncols*(aWidth), yM*y_step, 20, 100, wWidth, yM*y_step )
pG.yaxis(3)
pL_plot.intercept(0)
pL_plot.map("plot_igL", 0.3*pxl_cm, 3*pxl_cm, -1, -1 )
//------------------------------
set_sorting( pG )
iO = sort_igL( igL_order )
lcolor = 20
for i=0, igL.count-1 {
iG = igL.o( iO.x[i] )
// if(i==0) pG.label( 0, -y_step, str.sPrint( "%s %d", iG.fname, iG.ngen).s1 )
if(i==0) {
pG.label( 0, (yM+3)*y_step, str.sPrint( "BASE: %4d %s", pN.x[0], pF.s1 ).s1 )
if( pN.x[1]>=0 ) pG.label( 0, (yM+2)*y_step, str.sPrint( "CMPR: %4d %s", pN.x[1], pF.s2 ).s1 )
}
xp = int(i/yM)*(aWidth)+pLabW
yp = yM*y_step - (i%yM)*y_step // yM -i*y_step
pG.color( 1 )
pG.align( 1, 0 )
pG.glyph( glyph_1bar( label_color(iG.id)), xp-3, yp, -pLabW, y_step*0.7 )
pG.label( xp, yp, str.sPrint( "%s %8.3g ", iG.id, iG.val ).s1)
xp0 = xp+pValW+limW
xp1 = xp+pValW+limW+cValW+compW/2
if( iG.comp_flag==1 ){ // parm in both BASE and CMPR
if( sf.head( iG.id, "vhalf", str.s5 )>=0 || sf.head( iG.id, "Dv",str.s5 )>=0 ){ // parms in mV
rdiff = iG.iG_comp.val - iG.val
pG.glyph( glyph_1bar(5), xp1, yp, rdiff, y_step*0.7 )
pG.align( 0.5, 0 )
pG.label( xp1, yp, str.sPrint( "%.1f%mV", rdiff ).s1 )
}else{
rdiff =0
// if( iG.iG_comp.val != 0 ) rdiff = 100*( iG.iG_comp.val /iG.val - 1 )
if( iG.val != 0 ) rdiff = 100*( iG.iG_comp.val /iG.val - 1 )
if( rdiff != 0 ){
rd = 0.5*eT.min( abs(rdiff), 170 )
rd_sign = abs(rdiff)/rdiff
pG.glyph( glyph_1bar(4), xp1, yp, rd*rd_sign, y_step*0.7 )
if( abs(rdiff)> 170 ) \
pG.glyph( glyph_1bar(5), xp1+rd*rd_sign-2, yp, 2, y_step*0.7, -25 )
pG.align( 0.5, 0 )
pG.label( xp1, yp, str.sPrint( "%.1f%%", rdiff ).s1 )
}
}
}
if( iG.comp_flag==1 || iG.comp_flag==3 ){
if( (iG.comp_flag==1 && iG.val != iG.iG_comp.val) || (iG.comp_flag==3) ){ // Ugly; nrn is not like C
pG.align( 0, 0 )
pG.label( xp0, yp, str.sPrint( "%.3g%", iG.iG_comp.val ).s1 )
pG.glyph( glyph_1bar( label_color(iG.id)), xp0, yp, pxl_cm*0.8, y_step*0.7 )
if( iG.comp_flag==3 ) pG.label( xp0+1.3*pxl_cm, yp, "Parm in CMPR only" )
}
}
if( iG.fit && iG.comp_flag < 3 ){
pG.align( 0, 0 )
pG.label( xp+pValW, yp, str.sPrint( " %.4g:%.4g", iG.low, iG.hi ).s1 )
pG.glyph( glyph_fitP( iG, pValW), xp, yp+y_step*0.2 )
}
if( iG.comp_flag==2 ) {
pG.align( 0, 0 )
pG.label( xp0, yp, "Parm in BASE only" )
}
}
return pL_plot
}
//----------------------------------------------------------------------
public plot_igL_new
obfunc plot_igL_new(){ local i, lW, xp, yp, yM, ncols, rdiff localobj iG, str, sf, eT, iO, iOc
if( numarg() > 0 ) igL = $o1
eT = new eTrace()
pG = new Graph()
load_colors()
str = new str_obj()
sf = new StringFunctions()
// Match plot scale to pixels on screen
pxl_cm = 100/2.7 // 37 pixels per cm
margin = 2.2/500*pxl_cm // pxls; cm per width_pxl * pxl_cm
y_step = 16 // pixels
yM = 50 // lines per column
pLabW = 3.8 * pxl_cm
pValW = 4 * pxl_cm
limW = 2 * pxl_cm
cValW = 0.8 * pxl_cm
compW = 5 *pxl_cm
ncols = int(igL.count/yM)+1
aWidth = pLabW + pValW + limW + cValW + compW
wWidth = (ncols * aWidth)*(1+margin)
pG.fixed( 1 )
//------------------------------
pG.unmap()
pL_plot = new VBox()
pL_plot.intercept(1)
xpanel( "read-gen", 1 )
xbutton( "plot base gen...", "show_base_gen()" )
xbutton( "compare to base gen...", "compare_base_gen()" )
xpanel()
pG.view( 0, 0, ncols*(aWidth), yM*y_step, 20, 100, wWidth, yM*y_step )
pG.yaxis(3)
pL_plot.intercept(0)
pL_plot.map("plot_igL", 0.3*pxl_cm, 3*pxl_cm, -1, -1 )
//------------------------------
set_sorting( pG )
iO = sort_igL( igL_order )
lcolor = 20
for i=0, igL.count-1 {
iG = igL.o( iO.x[i] )
if(i==0) {
pG.label( 0, (yM+3)*y_step, str.sPrint( "BASE: %4d %s", pN.x[0], pF.s1 ).s1 )
if( pN.x[1]>=0 ) pG.label( 0, (yM+2)*y_step, str.sPrint( "CMPR: %4d %s", pN.x[1], pF.s2 ).s1 )
}
xp = int(i/yM)*(aWidth)+pLabW
yp = yM*y_step - (i%yM)*y_step // yM -i*y_step
plot_iG_val( iG, xp, yp )
}
return igL
}
//----------------------------------------------------------------------
obfunc plot_iG_val(){ local xp, yp localobj iG, str
{ iG=$o1 xp=$2 yp=$3 }
str = new str_obj()
{ pG.color( 1 ) pG.align( 1, 0 ) }
pG.label( xp, yp, str.sPrint( "%s %8.3g ", iG.id, iG.val ).s1 )
pG.glyph( glyph_1bar( label_color(iG.id)), xp-3, yp, -pLabW, y_step*0.7 )
if( iG.fit ){
pG.align( 0, 0 )
pG.label( xp+pValW, yp, str.sPrint( " %.4g:%.4g", iG.low, iG.hi ).s1 )
pG.glyph( glyph_fitP( iG, pValW), xp, yp+y_step*0.2 )
}
return iG
}
//----------------------------------------------------------------------
public glyph_1bar
obfunc glyph_1bar(){ local i, xw, yh, color localobj g
color = $1
g = new Glyph()
g.path() g.m(0,0) g.l(1,0) g.l(1,1) g.l(0,1) g.close() g.fill(color)
return g
}
//----------------------------------------------------------------------
public glyph_fitP
obfunc glyph_fitP(){ local i, xM localobj p, g, eT
p = $o1
xM = $2
g = new Glyph()
eT = new eTrace()
g.path() g.m(0,0) g.l(xM,0) g.s(1,2) // axis
xp = eT.min( p.cv/100*xM, 140/100*xM )
g.path() g.m(0,0) g.l(0,5) g.l(0+xp,5) g.l(0+xp,0) g.close() g.fill(21)
if( p.cv>140) { g.path() g.m(xp-3,-3) g.l(xp,7) g.s(21,2) }
xp = (p.min-p.low)/(p.hi-p.low)*xM
g.path() g.m(xp+3,5) g.l(xp,0) g.l(xp+3,-5) g.s(1,1) // left arrow
xp = (p.max-p.low)/(p.hi-p.low)*xM
g.path() g.m(xp-3,5) g.l(xp,0) g.l(xp-3,-5) g.s(1,1) // right arrow
xp = (p.val-p.low)/(p.hi-p.low)*xM // val
g.path() g.m(xp,7) g.l(xp,-7) g.s(2,2)
xp = (p.median-p.low)/(p.hi-p.low)*xM
g.path() g.m(xp,5) g.l(xp,-5) g.s(3,2)
xp = (p.mean-p.low)/(p.hi-p.low)*xM
g.path() g.m(xp,5) g.l(xp,-5) g.s(5,2)
return g
}
//--------------------------------------------------------------------------------
public compare_igL
obfunc compare_igL(){ local ia, ib localobj igA, igB, ig, igN, bV, igAc
igAc = $o1
igB = $o2
igN = new List()
bV = new Vector( igB.count, 0 ) // to find ib's not in A
// first, ge rid of possible comparisons values not in A
igA = new List()
for ia=0, igAc.count-1 if( igAc.o(ia).comp_flag!=3 ) igA.append( igAc.o(ia).copy() )
for ia=0, igA.count-1 {
ig = igA.o(ia).copy()
for ib=0, igB.count-1 {
if( ig.id == igB.o(ib).id ) break
}
if( ib < igB.count ){ //found match
ig.comp_flag = bV.x[ib] = 1
ig.iG_comp = igB.o(ib).copy
sprint( ig.fname, "%s-%d %s-%d", igA.o(ia).fname, igA.o(ia).ngen, igB.o(ib).fname, igB.o(ib).ngen )
//ig.comp_val = igB.o(ib).val
}else{ //no match
ig.comp_flag = 2 // parm ia not found in igB
sprint( ig.fname, "%s-%d ???-??", igA.o(ia).fname, igA.o(ia).ngen )
ig.iG_comp = new iGen( "", -1, "", 0 )
// ig.comp_val = 0
}
ig.ngen = -1
igN.append( ig )
}
for ib=0, bV.size-1 if( bV.x[ib]==0 ) {
ig = new iGen( "", -1, igB.o(ib).id, 0 )
ig.comp_flag = 3 // parm ib not found in igA
sprint( ig.fname, "???-? %s-%d", igB.o(ib).fname, igB.o(ib).ngen )
ig.ngen = -1
ig.iG_comp = igB.o(ib).copy()
igN.append( ig )
}
return igN
}
//--------------------------------------------------------------------------------
// Try substituting OPT home dir with axon home dir
public try_subs_path
func try_subs_path(){ local i localobj str, sf, str2
str = $o1
str2 = new str_obj( )
sprint( str2.s2, "perl -e '$_=\"%s\";s|/home/ohu0256|/axon/d1/Users/jose|;print $_'", str.s1 )
str.nsystem( str2.s2, str2.s3 )
eF = new File()
if( eF.ropen( str2.s3 )==0 ){
system( str2.sPrint( "ls -lt %s", str2.s3).s1 )
printf( "read_gen_parm_line:try_subs_path: file >>%s<< not found\n", str2.s3 )
return 0
}else{
pF.s1 = str2.s3
return 1
}
}
//--------------------------------------------------------------------------------
// return 1==OK, 0==ERROR, -1=End
public read_gen_parm_line
func read_gen_parm_line_old(){ local ngen, strl localobj str
str = new str_obj( $s1 )
ngen = $2
if( first_read_gen_parm_line ){
eF = new File()
if( eF.ropen( str.s1 ) == 0 ){
if( try_subs_path( str ) == 0 ){
printf( "read_gen_parm_line: file >>%s<< not found\n", str.s1 )
return -1
}
}
sprint( str.s2, "^end_nextGen gen_N %4d ", ngen )
strl = eF.gets( str.s3 )
while( strl>=0 && sf.head( str.s3, str.s2, str.s4 )<0 ) strl=eF.gets(str.s3)
if( strl<0 ){
printf( "read_gen_parm_line: generation %d not found\n", ngen )
return -1
}
if( idebug ) printf( "found gen %d tell %d >>%s<<\n", ngen, eF.tell(), str.s3 )
strl = eF.gets( str.s3 )
while( strl>=0 && sf.head( str.s3, "Fit-parm", str.s4 )<0 ) strl=eF.gets(str.s3)
if( strl<0 ){
printf( "read_gen_parm_line: unexpected error looking for >>Fit-parm<< line\n" )
return -1
}
first_read_gen_parm_line = 0
}
// printf( "found gen %d tell %d\n>>%s<<\n", ngen, eF.tell(), str.s3 )
strl = eF.gets( str.s3 )
while( strl>=0 && sf.head( str.s3, "^------", str.s4 )>=0 ) strl=eF.gets(str.s3) // skip line
if( strl>=0 && sf.head( str.s3, "elapsed", str.s4 )<0 ) {
$s3 = str.s3
return 1
}else{
first_read_gen_parm_line = 1
eF.close()
return -1
}
}
//--------------------------------------------------------------------------------
public openF
obfunc openF(){ local i localobj str
str = new str_obj( $s1 )
eF = new File()
if( eF.ropen( str.s1 ) == 0 ){
if( try_subs_path( str ) == 0 ){
printf( "read_gen_parm_line: file >>%s<< not found\n", str.s1 )
}
}
return eF
}
//--------------------------------------------------------------------------------
// return 1==OK, 0==ERROR, -1=End
public read_gen_parm_line
func read_gen_parm_line(){ local ngen, strl localobj str
str = new str_obj( $s1 )
ngen = $2
if( first_read_gen_parm_line ){
if( object_id( eF )==0 ) { // file has not been opened
printf( "rgpl: opening file >>%s<<\n", str.s1 )
openF( str.s1 )
set_genN_ptrs( eF )
}else{
if( sf.substr( str.s1, eF.getname()) < 0 ){ // file change
printf( "rgpl: closing and reopening file >>%s<<\n", str.s1 )
eF.close()
openF( str.s1 )
set_genN_ptrs()
}
}
if( ngen > genN_ptrs.size-1 ){
printf( "read_gen_parm_line: generation %d not found\n", ngen )
return -1
}
eF.seek( genN_ptrs.x[ ngen] )
// printf( "rgpl: tell %d\n", eF.tell() )
first_read_gen_parm_line = 0
}
strl = eF.gets( str.s3 )
// for some reason sf.head below crashes with segmentation violation sometimes
// while( strl>=0 && sf.head( str.s3, "^----------", str.s4 )>=0 ) strl=eF.gets(str.s3) // skip line
while( strl>=0 && sf.substr( str.s3, "---------", str.s4 )>=0 ) strl=eF.gets(str.s3) // skip line
if( strl>=0 && sf.head( str.s3, "elapsed", str.s4 )<0 ) {
// printf( "rgpl: returned line >>%s<<\n", str.s3 )
$s3 = str.s3
return 1
}else{
// printf( "rgpl: Done with gen %d\n", ngen )
first_read_gen_parm_line = 1
return -1
}
}
//--------------------------------------------------------------------------------
public read_iGen
obfunc read_iGen(){ local i, sval, ngen, val, bst, med, sdr, cvr, mean, sd, cv, min, max, low, hi localobj str, igL
str = new str_obj( $s1 ) // s1=filename, s2-s5 tmp-strs
ngen = $2
sdr = cvr =0
igL = new List()
// iPv = new vList()
while( (rval = read_gen_parm_line( str.s1, ngen, str.s2 )) > 0 ){
sval = sscanf( str.s2, "%s %g", str.s3, &val )
if( idebug )printf( "read_iGen: s3 %s val %g sval %g\n", str.s3, val, sval )
sval = sscanf( str.s2, "%*s %*g %g %g %g %g %g %g %g %g %g %g:%g", \
&bst, &med, &sdr, &cvr, &mean, &sd, &cv, &min, &max, &low, &hi )
// cases 1 2 3 4 5 6 7 8 9 10 11 in above sscanf
// 0 Set-var: varid val sval -1
// 1 Fit-var-new-fmt: varid val bst med sdr cvr mean sd cv min max low:hi sval 11
// 2 Costs-new-fmt: costid val bst med sdr cvr mean sd cv min max sval 9 set low=min hi=max
// 3 Fit-var-old-fmt: varid val bst med mean sd cv min max low:hi sval 8 set sdr=sd cvr=cv
//3.1 Fit-var-old-fmt varid val bst med H mean sd cv min max low:hi sval 2 set sdr=sd cvr=cv
// 4 Costs-old-fmt: varid val bst med mean sd cv min max sval 7 plus low=min hi=max
if( idebug ) printf( "read_iGen: sval %d %s val %g %g med %g %g %g mean %g %g %g min %g %g %g %g\n",\
sval, str.s3, val, bst, med, sdr, cvr, mean, sd, cv, min, max, low, hi )
if( sval!=-1 && sval!=2 && sval!=11 && sval!=9 && sval!=8 && sval!=7 ){
printf( "\t\tread_iGen: WARNING: Unrecognized log line >>%s<< IGNORED\n", str.s2 )
printf( "read_iGen: sval %d %s val %g %g med %g %g %g mean %g %g %g min %g %g %g %g\n",\
sval, str.s3, val, bst, med, sdr, cvr, mean, sd, cv, min, max, low, hi )
continue
}
if( sval == 9 ) { low=min hi=max } // cost-totals have no lo:hi field
if( sval == 8 || sval == 7 ) {
sval = sscanf( str.s2, "%*s %*g %g %g %g %g %g %g %g %g:%g", \
&bst, &med, &mean, &sd, &cv, &min, &max, &low, &hi )
if( sval!=7 && sval!=9 ){
printf( "\t\tread_iGen: WARNING 2: Unrecognized log line >>%s<< IGNORED\n", str.s2 )
continue
}
sdr=sd cvr=cv
if( sval==7 ) { low=min hi=max }
}
if( sval == 2 ) {
sval = sscanf( str.s2, "%*s %*g %g %g H %g %g %g %g %g %g:%g", \
&bst, &med, &mean, &sd, &cv, &min, &max, &low, &hi )
if( sval!=9 ){
printf( "\t\tread_iGen: WARNING 3: Unrecognized log line >>%s<< IGNORED\n", str.s2 )
continue
}
sdr=sd cvr=cv
}
if( sval <= 0 ) igL.append( new iParStat( str.s1, ngen, str.s3, val ))
if( sval > 0 ) igL.append( new iParStat( str.s1, ngen, str.s3, val, bst, med, sdr, cvr, mean, sd, cv, min, max, low, hi ))
if( idebug ) {
printf( "read_iGen: %s %g ", str.s3, val )
if( sval > 2 ) printf( "bst %g med %g sdr %g cvr %g mean %g sd %g cv %g min %g max %g lo %g hi %g", \
bst, med, sdr, cvr, mean, sd, cv, min, max, low, hi )
printf( "\n" )
}
}
return igL
}
//----------------------------------------------------------------------
public max_genN
func max_genN(){ local i, go_on, nmax localobj str
str = new str_obj( $s1 )
openF( str.s1 )
return set_genN_ptrs( eF )
}
func max_genN_old(){ local i, go_on, nmax localobj str, aF, sf
str = new str_obj( $s1 )
sf = new StringFunctions()
aF = new File()
if( aF.ropen( str.s1 ) == 0 ){
printf( "read_gen_parm_line: file >>%s<< not found\n", str.s1 )
return -1
}
nmax=0 go_on=1
while( 1 ){
nmax+=1
sprint( str.s2, "^end_nextGen gen_N %4d ", nmax )
strl = aF.gets( str.s3 )
while( strl>=0 && sf.head( str.s3, str.s2, str.s4 )<0 ) strl=aF.gets(str.s3)
if( strl<0 ) break
}
aF.close()
return nmax-1
}
//----------------------------------------------------------------------
public set_genN_ptrs
func set_genN_ptrs(){ local i, go_on, ngen localobj str, aF
aF = $o1
aF.tell( 0 )
str = new str_obj()
genN_ptrs=new Vector()
genN_ptrs.append(0) // gen 0 is not well defined; skip
ngen=0 go_on=1
while( 1 ){
ngen+=1
sprint( str.s2, "^end_nextGen gen_N %4d ", ngen )
strl = aF.gets( str.s3 )
while( strl>=0 && sf.head( str.s3, str.s2, str.s4 )<0 ) strl=aF.gets(str.s3)
if( strl<0 ){ // done; EOF
break
}
if( idebug ) printf( "found gen %d tell %d >>%s<<\n", ngen, aF.tell(), str.s3 )
strl = aF.gets( str.s3 )
while( strl>=0 && sf.head( str.s3, "Fit-parm", str.s4 )<0 ) strl=aF.gets(str.s3)
if( strl<0 ){
printf( "read_gen_parm_line: unexpected error looking for >>Fit-parm<< line\n" )
return -1
}
// printf( "set_genN_ptrs: gen %d at %d\n>>%s<<\n", ngen, aF.tell(), str.s3 )
genN_ptrs.append( aF.tell() )
}
// printf( "return ngen %d\n", ngen-1 )
return ngen-1
}
//----------------------------------------------------------------------
// create file logf-g{ngen}cbest.hoc with values for the best pop member in generation ngen of logfile logf
public save_genN_cbest //( logf, ngen )
obfunc save_genN_cbest(){ local i, ngen localobj str
str = new str_obj( $s1 )
ngen = $2
str.nsystem( "pwd", str.s2 )
sprint( str.s1, "%s/%s", str.s2, str.s1 )
if( idebug ) printf( "save_genN_cbest: reading %d from >>%s<<\n", ngen, str.s1 )
igL = read_iGen( str.s1, ngen )
// for i=0, igL.count-1 printf( "%s = %.10g\n", igL.o(i).id, igL.o(i).val )
sprint( str.s2, "// inserted by pDE_log save_genN_cbest" )
sprint( str.s2, "%s\npDE_asg()\nproc pDE_asg(){", str.s2 ) // We call pDE_asg() to get other values not in igL set
sprint( str.s2, "%s\npDE_log_name =\\\"%s\\\"\n pDE_gen_N=%d", str.s2, str.s1, ngen )
for i=0, igL.count-1 {
if( strcmp( "cost-total", igL.o(i).id ) == 0 ) break // no more simultation variables
sprint( str.s2, "%s\n %s=%.10g", str.s2, igL.o(i).id, igL.o(i).val )
}
// for i=0, igL.count-1 sprint( str.s2, "%s\n %s=%.10g", str.s2, igL.o(i).id, igL.o(i).val )
sprint( str.s2, "%s\n}\n\nproc pDE_do_all", str.s2 )
if( idebug ) printf( "save_genN_cbest: >>%s<<\n" ,str.s2 )
sprint( str.s3, "cat %s-cbest.hoc | perl -e '$asg=\"%s\";$pd=\"proc pDE_do_all\";while(<>){s/$pd/$asg/; print $_}' > %s-g%d-cbest.hoc", str.s1, str.s2, str.s1, ngen )
if( idebug ) printf( "save_genN_cbest: s3 >>%s<<\n", str.s3 )
system( str.s3 )
return igL
}
//----------------------------------------------------------------------
// create file logf-g{ngen}.csv with values for the generation ngen of logfile logf
public save_genN //( logf, ngen )
obfunc save_genN(){ local i, option, ngen localobj str, iL, eF
str = new str_obj( $s1 )
ngen = $2
option = 0
if( numarg() > 2 ) option=$3
if( idebug ) printf( "save_genN_cbest: reading %d from >>%s<<\n", ngen, str.s1 )
igL = read_iGen( str.s1, ngen )
eF = new File()
eF.wopen( str.sPrint( 2, "%s-gen%d.csv", str.s1, ngen).s2 )
if( option == 0 ){
eF.printf( "%s %d\n", str.s1, ngen )
eF.printf( "parm_id, best, median, mean, sd, cv, min, max, low, hi\n" )
for i=0, igL.count-1 {
iL = igL.o(i)
eF.printf( "%s, %.10g", iL.id, iL.val )
if( iL.fit ) eF.printf( ", %.10g, %.10g, %.10g, %.10g, %.10g, %.10g, %.10g, %.10g", \
iL.median, iL.mean, iL.sd, iL.cv, iL.min, iL.max, iL.low, iL.hi )
eF.printf( "\n" )
}
}
if( option == 1 ){ // print set var first and fit var after
eF.printf( "%s %d\n", str.s1, ngen )
eF.printf( "parm_id, best, median, mean, sd, cv, min, max, low, hi\n" )
for i=0, igL.count-1 if( igL.o(i).fit==0 ) eF.printf( "%s, %.10g\n", igL.o(i).id, igL.o(i).val )
for i=0, igL.count-1 {
if( igL.o(i).fit==0 ) continue
iL = igL.o(i)
eF.printf( "%s, %.10g, %.10g, %.10g, %.10g, %.10g, %.10g, %.10g, %.10g, %10g\n", \
iL.id, iL.val, iL.median, iL.mean, iL.sd, iL.cv, iL.min, iL.max, iL.low, iL.hi )
}
}
eF.close()
return igL
}
endtemplate pDE_log
/*
================================================================================
Usage
objref ig1, ig2, igL
strdef pDE_log_name
obfunc plot_gen(){
igL = new pDE_log()
ig1 = igL.read_iGen( pDE_log_name, pDE_gen_N )
igL.plot_igL( ig1 )
return ig1
}
================================================================================
objref eL, str, sf, eL2, dL, pG, igL, ig2, ig1, igC
eL = new pDE_log()
// ig1 = eL.read_iGen( "test.log", 3 )
// ig1 = eL.read_iGen( "x13-080106a-n420+aX+h+Naf+s+KA+KDRa_bAP.pDE_25Apr08-15-56-17.log", 160 )
// ig2 = eL.read_iGen( "x13-080106a-n420+aX+h+Naf+s+KA+KDRa_bAP.pDE_25Apr08-15-56-17.log", 180 )
//ig1 = eL.read_iGen( "../x13-long-train/x13-080106a-n420+aX+Fix2-h+Naf+KA+KDRa_i1-DfpwdV-htf-oscBale-v2.pDE_20Nov07-16-26-59.log", 275 )
//ig1 = eL.read_iGen( "../x13-long-train/x13-080106a-n420+aX+Fix2-h+Naf+KA+KDRa_i1-DfpwdV-htf-oscBale-v2.pDE_16Nov07-17-06-24.log", 476 )
//ig1 = eL.read_iGen( "../x13-long-train/x13-080106a-n420+aX+Fix2-h+Naf+KA+KDRa_i1-DfpwdV-htf.pDE_31Oct07-20-08-05.log", 750 )
//ig1 = eL.read_iGen( "../x13-long-train/x13-080106a-n420+aX+Fix2-h+Naf+KA+KDRa_i1-DfpwdV-htf.pDE_31Oct07-19-05-07.log", 51 )
// eL.plot_igL( ig1 )
// abort()
//ig1 = eL.read_iGen( "x13-080106a-n420+aX+h+Naf+s+KA+KDRa_bAP.pDE_29Apr08-11-20-00.log", 195 )
// ig1 = eL.read_iGen( "x13-080106a-n420+aX+h+Naf+s+KA+KDRa_bAP.pDE_25Apr08-15-56-17.log", 280 )
// ig2 = eL.read_iGen( "x13-080106a-n420+aX+h+Naf+s+KA+KDRa_bAP.pDE_21Apr08-17-03-18.log", 430 )
//ig1 = eL.read_iGen( "../x13-080106a/x13-080106a-n420-Passive.pDE_15Apr08-16-05-02.log", 50 )
//ig2 = eL.read_iGen( "../x13-080106a/x13-080106a-n420+Fix-h+Naf+KDR.pDE_05May08-15-22-36.log", 135 )
ig1 = eL.read_iGen( "../x13-080106a/x13-080106a-n420+Fix-h+Naf+KDR.pDE_06May08-13-04-25.log", 15 )
//igC = eL.compare_igL( ig2, ig1 )
eL.plot_igL( ig1 )
//pG = new Graph()
//pG.glyph( eL.glyph_fitP( eL.igL.o(8) ), 50, 50 )
abort()
objref tS, str, tSr
proc tS_do(){
if( numarg() == 2 ) tSr = tS.split( $s1, $s2 )
if( numarg() > 2 ) tSr = tS.split( $s1, $s2, 1 )
printf( ">>>begin<<<\n")
for i=0,tSr.count-1 printf( "%d >>%s<<\n", i, tSr.o(i).s1 )
printf( ">>>done<<<\n")
}
proc test_split(){
tS = new pDE_log()
tS_do( " a\tb\nc\td\n", "[ \t\n]" )
tS_do( " a\tb\nc\td\n", "[ \t\n]", 1 )
tS_do( "a\tb\nc\td", "[ \t\n]" )
tS_do( "a\t b\nc\td ", "[ \t\n]" )
tS_do( "\ta\t\t b\nc\td ", "[ \t\n]" )
tS_do( " a b c d ", "[ \t\n]" )
tS_do( " a b ckk d ", " " )
tS_do( " ab\nb ckk d ", " " )
}
test_split()
*/