ValueError

[lingrongjin]

I got the following error when running the COBRA pipeline. I have run cobra.py with other metagenomes which worked fine but had problems this particular sample. I checked that contig "AcMG_755" is in the query list and it's also in the path_circular list according to the debug file. I'm wondering if you have any clues where the error may come from? Thanks!

2.2. Analyzing assemblied paths and solving conflicts: 88%|████████▊ | 7/8 [00:06<00:01, 1.03s/it]Traceback (most recent call last):
File "/storage/jufengLab/jinlingrong/Software/cobra/cobra.py", line 2291, in
main()
File "/storage/jufengLab/jinlingrong/Software/cobra/cobra.py", line 2273, in main
cobra(
File "/storage/jufengLab/jinlingrong/Software/cobra/cobra.py", line 1646, in cobra
check_assembly_reason = {
File "/storage/jufengLab/jinlingrong/Software/cobra/cobra.py", line 1649, in
for k, v in get_assembly2reason(
File "/storage/jufengLab/jinlingrong/Software/cobra/cobra.py", line 1393, in get_assembly2reason
frags = frags[: frags.index(subset_circular[0]) + 1]
ValueError: 'AcMG_755' is not in list