Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Usage of cobra #25

Open
quliping opened this issue Feb 26, 2024 · 2 comments
Open

Usage of cobra #25

quliping opened this issue Feb 26, 2024 · 2 comments

Comments

@quliping
Copy link

Cobra is an interesting software, but I have some questions. Is the input data must be viral metagenome data? I'm not sure if cobra could works for common metagenome data and will cobra produce some bacteria or archaea MAGs? Thanks.
@linxingchen
Copy link
Owner

Hi, thanks for your interest in COBRA. Could you please refer to Issue#22 regarding the usage of COBRA on whole metagenomes? Let me know if anything stated therein is unclear.

Best,
LINXING

@linxingchen
Copy link
Owner

Technically, you could use COBRA before binning, this step will make some of your contigs/scaffolds longer, but the issue is you have to rerun the mapping for a new sequencing coverage profile.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@quliping @linxingchen