{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":668221555,"defaultBranch":"main","name":"Node2VecHiC","ownerLogin":"keivan-amini","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-07-19T09:55:26.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/100836058?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1689760526.0","currentOid":""},"activityList":{"items":[{"before":"6142b538ca17c7c5a14f1682ec24cf17c2317ff2","after":"7731abb6c64e95e72177d32bfa9a63484772da9d","ref":"refs/heads/main","pushedAt":"2023-10-05T10:33:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"specified parameters call in the node2vec.fit() method in order to avoid errors.","shortMessageHtmlLink":"specified parameters call in the node2vec.fit() method in order to av…"}},{"before":"e5fe03dbfe6bf6161d1f1fff04f24f887f5a0a0b","after":"6142b538ca17c7c5a14f1682ec24cf17c2317ff2","ref":"refs/heads/main","pushedAt":"2023-10-05T10:31:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added tests function for run_node2vec(), run_pca() and normalize_features(). Splitted mean and std dev test into two functions.","shortMessageHtmlLink":"added tests function for run_node2vec(), run_pca() and normalize_feat…"}},{"before":"0841e24eefac67d64a96ceb2880fc702672771c9","after":"e5fe03dbfe6bf6161d1f1fff04f24f887f5a0a0b","ref":"refs/heads/main","pushedAt":"2023-10-05T08:52:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added functions that generate graphs list and main list for testing of hic functions. made more consistent tests for get_block_graph(), remove_empty_axis() and get_complementary_list().","shortMessageHtmlLink":"added functions that generate graphs list and main list for testing o…"}},{"before":"fafa115146280ccbf6e4d76490c17de3b65b004a","after":"0841e24eefac67d64a96ceb2880fc702672771c9","ref":"refs/heads/main","pushedAt":"2023-10-04T11:19:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added test_function_get_attributes() to test the function get_graph_attributes()","shortMessageHtmlLink":"added test_function_get_attributes() to test the function get_graph_a…"}},{"before":"a07d09689dc27879f3f696e1f28886e289209a31","after":"fafa115146280ccbf6e4d76490c17de3b65b004a","ref":"refs/heads/main","pushedAt":"2023-10-04T10:56:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added function generate_block_df() for testing purposes. simplified test_nodes_block_df() and introduced test_get_block_df().","shortMessageHtmlLink":"added function generate_block_df() for testing purposes. simplified t…"}},{"before":"b86a5fbb3880c7a08f1ab8bd384a98f9eefb2bda","after":"a07d09689dc27879f3f696e1f28886e289209a31","ref":"refs/heads/main","pushedAt":"2023-10-03T17:27:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added test related to remove_empty_axis() function.","shortMessageHtmlLink":"added test related to remove_empty_axis() function."}},{"before":"1045688d24f876d0229c830f1be008b6cddce9e5","after":"b86a5fbb3880c7a08f1ab8bd384a98f9eefb2bda","ref":"refs/heads/main","pushedAt":"2023-10-03T17:17:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added 3 tests related to mathematical properties of the hic dataframe. added 1 test for the function get_complementary_list().","shortMessageHtmlLink":"added 3 tests related to mathematical properties of the hic dataframe…"}},{"before":"04864fecde5af4725a57ec31ce648f67e8bcde5a","after":"1045688d24f876d0229c830f1be008b6cddce9e5","ref":"refs/heads/main","pushedAt":"2023-10-03T16:12:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"simplified fake metadata example. added test functions that actually test metadata module functions, with expected results.","shortMessageHtmlLink":"simplified fake metadata example. added test functions that actually …"}},{"before":"05619df7eb93ed58206408ef7a98c8032e913b82","after":"04864fecde5af4725a57ec31ce648f67e8bcde5a","ref":"refs/heads/main","pushedAt":"2023-10-03T10:43:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"removed fit_model() function; instead just use run_node2vec() function. adjusted parameters and docstrings of run_node2vec().","shortMessageHtmlLink":"removed fit_model() function; instead just use run_node2vec() functio…"}},{"before":"af2957cc5bf66aa41f3be14453e34dba573d0123","after":"05619df7eb93ed58206408ef7a98c8032e913b82","ref":"refs/heads/main","pushedAt":"2023-10-03T10:32:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"moved main.py in the scripts folder, to improve organization of the repository.","shortMessageHtmlLink":"moved main.py in the scripts folder, to improve organization of the r…"}},{"before":"82764e93b91095c4d7a145a5abc58bed4632023a","after":"af2957cc5bf66aa41f3be14453e34dba573d0123","ref":"refs/heads/main","pushedAt":"2023-10-03T10:18:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"removed pycache","shortMessageHtmlLink":"removed pycache"}},{"before":"d3faa2bf43ba56d3fb9a85b004cd16b463d2c896","after":"82764e93b91095c4d7a145a5abc58bed4632023a","ref":"refs/heads/main","pushedAt":"2023-10-03T10:13:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"moved position of the 'Repository Structure' to the bottom of the README.md","shortMessageHtmlLink":"moved position of the 'Repository Structure' to the bottom of the REA…"}},{"before":"eba7066529b6f674d8a5d38ca990fc9b77e22ae1","after":"d3faa2bf43ba56d3fb9a85b004cd16b463d2c896","ref":"refs/heads/main","pushedAt":"2023-10-01T15:37:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added plots in the documents, adjusted conclusions and introduced Appendix","shortMessageHtmlLink":"added plots in the documents, adjusted conclusions and introduced App…"}},{"before":"3fc65898566cb40e3a73842562d7e2fdfdcd2878","after":"eba7066529b6f674d8a5d38ca990fc9b77e22ae1","ref":"refs/heads/main","pushedAt":"2023-09-28T08:41:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"removed TODO line","shortMessageHtmlLink":"removed TODO line"}},{"before":"3ef1d94c6dd094b36415e6bcee0ca7a75f463b20","after":"3fc65898566cb40e3a73842562d7e2fdfdcd2878","ref":"refs/heads/main","pushedAt":"2023-09-28T08:39:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added project documentation","shortMessageHtmlLink":"added project documentation"}},{"before":"899e7c09f67fd536eb34f32ca687a9727ea954a6","after":"3ef1d94c6dd094b36415e6bcee0ca7a75f463b20","ref":"refs/heads/main","pushedAt":"2023-09-27T18:45:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"removed not reproducible plots with the current version of the repository.","shortMessageHtmlLink":"removed not reproducible plots with the current version of the reposi…"}},{"before":"c6054deeb92bf6eae2a811fb0ecce2e97e4e6295","after":"899e7c09f67fd536eb34f32ca687a9727ea954a6","ref":"refs/heads/main","pushedAt":"2023-09-27T18:43:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"modified parameters of the get_plot_chromosome() function","shortMessageHtmlLink":"modified parameters of the get_plot_chromosome() function"}},{"before":"e628df13f42321c915ddb80a6ab145d4bc3c88d2","after":"c6054deeb92bf6eae2a811fb0ecce2e97e4e6295","ref":"refs/heads/main","pushedAt":"2023-09-27T18:29:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added main to reproduce simulations in the pdf document","shortMessageHtmlLink":"added main to reproduce simulations in the pdf document"}},{"before":"e641236eaa0775615da1bb29a38ab2ecf241b6d5","after":"e628df13f42321c915ddb80a6ab145d4bc3c88d2","ref":"refs/heads/main","pushedAt":"2023-09-27T18:24:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added title and save_path parameters to get_plot_chromosome() function","shortMessageHtmlLink":"added title and save_path parameters to get_plot_chromosome() function"}},{"before":"1fdb88e339659441f0c2f02273ec17ed7f26f5fb","after":"e641236eaa0775615da1bb29a38ab2ecf241b6d5","ref":"refs/heads/main","pushedAt":"2023-09-27T18:15:36.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/keivan-amini/Node2VecHiC","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/keivan-amini/Node2VecHiC"}},{"before":"b012d6b1bb9a97231da34cbb4db1542c7e825ddb","after":"1fdb88e339659441f0c2f02273ec17ed7f26f5fb","ref":"refs/heads/main","pushedAt":"2023-09-20T22:59:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added embeddings csv for testing purposes.","shortMessageHtmlLink":"added embeddings csv for testing purposes."}},{"before":"fd4b5af5296ebcd1b11d166f104a5bafd5bb3b95","after":"b012d6b1bb9a97231da34cbb4db1542c7e825ddb","ref":"refs/heads/main","pushedAt":"2023-09-20T22:52:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added hypothesis library requirement","shortMessageHtmlLink":"added hypothesis library requirement"}},{"before":"3b653a72b16c124990048be62bd0d7bdb6115f92","after":"fd4b5af5296ebcd1b11d166f104a5bafd5bb3b95","ref":"refs/heads/main","pushedAt":"2023-09-20T17:53:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"Update README.md\n\nchanged repository structure","shortMessageHtmlLink":"Update README.md"}},{"before":"13a5226eb7c55c9ba01913571ce3906a8b4b5fcb","after":"3b653a72b16c124990048be62bd0d7bdb6115f92","ref":"refs/heads/main","pushedAt":"2023-09-20T17:50:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"updated docstrings in the run_pca() method","shortMessageHtmlLink":"updated docstrings in the run_pca() method"}},{"before":"293a70d97e144768099b8d6f1471970ad9332650","after":"13a5226eb7c55c9ba01913571ce3906a8b4b5fcb","ref":"refs/heads/main","pushedAt":"2023-09-20T17:47:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"removed useless file","shortMessageHtmlLink":"removed useless file"}},{"before":"e5d6d5d872c3ce16ea288f014d90df2ffdf01894","after":"293a70d97e144768099b8d6f1471970ad9332650","ref":"refs/heads/main","pushedAt":"2023-09-20T17:46:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added last version Node2Vec folder","shortMessageHtmlLink":"added last version Node2Vec folder"}},{"before":"695cac1a3335363c59f87982fe4a03da6bf0cbd7","after":"e5d6d5d872c3ce16ea288f014d90df2ffdf01894","ref":"refs/heads/main","pushedAt":"2023-09-20T17:45:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added generate_hic() function and small bug fixes","shortMessageHtmlLink":"added generate_hic() function and small bug fixes"}},{"before":"999c680d3a38f58694db65fa0bed9e4186f29581","after":"695cac1a3335363c59f87982fe4a03da6bf0cbd7","ref":"refs/heads/main","pushedAt":"2023-09-20T17:38:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"updated notebook","shortMessageHtmlLink":"updated notebook"}},{"before":"403c8d4c55b839c93cb164bfc7f310aea69c4c03","after":"999c680d3a38f58694db65fa0bed9e4186f29581","ref":"refs/heads/main","pushedAt":"2023-09-20T17:32:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"updated main","shortMessageHtmlLink":"updated main"}},{"before":"64ad43c3f0903e758e933c2fb8d9413e57d71dfd","after":"403c8d4c55b839c93cb164bfc7f310aea69c4c03","ref":"refs/heads/main","pushedAt":"2023-09-20T17:27:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"keivan-amini","name":"Keivan Amini","path":"/keivan-amini","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/100836058?s=80&v=4"},"commit":{"message":"added docstrings to graphics module","shortMessageHtmlLink":"added docstrings to graphics module"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyMy0xMC0wNVQxMDozMzoxMy4wMDAwMDBazwAAAAOQDOjH","startCursor":"Y3Vyc29yOnYyOpK7MjAyMy0xMC0wNVQxMDozMzoxMy4wMDAwMDBazwAAAAOQDOjH","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0wOS0yMFQxNzoyNzowOC4wMDAwMDBazwAAAAOFDMQN"}},"title":"Activity · keivan-amini/Node2VecHiC"}