DESCRIPTION

Package: CACIMAR
Title: cross-species analysis of cell identities, markers and regulations
Version: 1.0.0
Authors@R: 
    person(given = "Junyao",
           family = "Jiang",
           role = c("aut", "cre"),
           email = "jiangjunyao789@163.com")
Description: A toolkit to perform cross-species analysis based on scRNA-seq data. CACIMAR contains 5 main features. (1) identify Markers in each cluster. (2) Cell type annotaion (3) identify conserved markers. (4) identify conserved cell types. (5) identify conserved modules of regulatory networks.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Imports: 
    pheatmap,
    pbapply,
    psych,
    ROCR,
    gridExtra,
    reshape2,
    dplyr,
    grDevices,
    stats,
    methods,
    viridisLite,
    biomaRt,
    ape,
    ggplot2,
    igraph,
    purrr,
    stringr
Depends: 
    R (>= 4.0),
    Seurat,
    tidyverse,
    ggtree
Suggests: 
    testthat (>= 3.0.0)
Config/testthat/edition: 3