sidebars.js

module.exports = {
  "someSidebar": [
    {
      "collapsed": true,
      "type": "category",
      "label": "Introduction",
      "items": [
        {
          "type": "doc",
          "id": "introduction/index"
        },
        {
          "type": "doc",
          "id": "introduction/features"
        },
        {
          "type": "doc",
          "id": "introduction/architecture"
        }
      ]
    },
    {
      "collapsed": true,
      "type": "category",
      "label": "System Requirements",
      "items": [
        {
          "type": "doc",
          "id": "system-requirements/hardware/index"
        },
        {
          "collapsed": true,
          "type": "category",
          "label": "Software",
          "items": [
            {
              "type": "doc",
              "id": "system-requirements/software/index"
            },
            {
              "type": "doc",
              "id": "system-requirements/software/git"
            },
            {
              "type": "doc",
              "id": "system-requirements/software/java"
            },
            {
              "type": "doc",
              "id": "system-requirements/software/perl"
            },
            {
              "collapsed": true,
              "type": "category",
              "label": "PostgreSQL",
              "items": [
                {
                  "type": "doc",
                  "id": "system-requirements/software/postgres/postgres"
                },
                {
                  "type": "doc",
                  "id": "system-requirements/software/postgres/hikari"
                }
              ]
            },
            {
              "type": "doc",
              "id": "system-requirements/software/tomcat"
            },
            {
              "type": "doc",
              "id": "system-requirements/software/macs"
            },
            {
              "type": "doc",
              "id": "system-requirements/software/solr"
            },
            {
              "collapsed": true,
              "type": "category",
              "label": "Gradle",
              "items": [
                {
                  "type": "doc",
                  "id": "system-requirements/software/gradle/index"
                },
                {
                  "type": "doc",
                  "id": "system-requirements/software/gradle/faqs"
                }
              ]
            },
            {
              "type": "doc",
              "id": "system-requirements/software/intellij"
            },
            {
              "type": "doc",
              "id": "system-requirements/software/maven"
            }
          ]
        }
      ]
    },
    {
      "collapsed": true,
      "type": "category",
      "label": "Get started",
      "items": [
        {
          "type": "doc",
          "id": "get-started/tutorial/index"
        },
        {
          "type": "doc",
          "id": "get-started/tutorial/webapp"
        },
        {
          "type": "doc",
          "id": "get-started/tutorial/test-data"
        },
        {
          "type": "doc",
          "id": "get-started/quick-start"
        },
        {
          "type": "doc",
          "id": "get-started/create-your-mine"
        },
        {
          "type": "doc",
          "id": "get-started/testmine"
        },
        {
          "type": "doc",
          "id": "get-started/intermine-tests"
        }
      ]
    },
    {
      "collapsed": true,
      "type": "category",
      "label": "InterMine",
      "items": [
        {
          "type": "doc",
          "id": "intermine/intermine"
        },
        {
          "type": "doc",
          "id": "intermine/upgrade"
        },
        {
          "type": "doc",
          "id": "intermine/roadmap"
        },
        {
          "type": "doc",
          "id": "intermine/intermine-versions"
        },
        {
          "type": "doc",
          "id": "intermine/javadoc/index"
        },
        {
          "type": "doc",
          "id": "intermine/get-involved"
        },
        {
          "type": "doc",
          "id": "intermine/amazon"
        }
      ]
    },
    {
      "collapsed": true,
      "type": "category",
      "label": "Data Model",
      "items": [
        {
          "type": "doc",
          "id": "data-model/overview"
        },
        {
          "type": "doc",
          "id": "data-model/model"
        },
        {
          "type": "doc",
          "id": "data-model/data-labels"
        },
        {
          "type": "doc",
          "id": "api/pathquery"
        },
        {
          "type": "doc",
          "id": "data-model/overlaps"
        },
        {
          "type": "doc",
          "id": "data-model/model-ontologies"
        }
      ]
    },
    {
      "collapsed": true,
      "type": "category",
      "label": "Database",
      "items": [
        {
          "type": "doc",
          "id": "database/download-scripts"
        },
        {
          "collapsed": true,
          "type": "category",
          "label": "Data Sources",
          "items": [
            {
              "collapsed": true,
              "type": "category",
              "label": "Data Source Library",
              "items": [
                {
                  "type": "doc",
                  "id": "database/data-sources/library/index"
                },
                {
                  "collapsed": true,
                  "type": "category",
                  "label": "Gene Ontology",
                  "items": [
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/go/go-annotation"
                    },
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/go/go-obo"
                    }
                  ]
                },
                {
                  "collapsed": true,
                  "type": "category",
                  "label": "Homologue Data Sources",
                  "items": [
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/homologues/index"
                    },
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/homologues/treefam"
                    },
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/homologues/homologene"
                    },
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/homologues/orthodb"
                    },
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/homologues/panther"
                    },
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/homologues/compara"
                    }
                  ]
                },
                {
                  "collapsed": true,
                  "type": "category",
                  "label": "Interactions",
                  "items": [
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/interactions/biogrid"
                    },
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/interactions/intact"
                    },
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/interactions/intact-complexes"
                    },
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/interactions/psi-mi-ontology"
                    }
                  ]
                },
                {
                  "collapsed": true,
                  "type": "category",
                  "label": "Pathway data sources",
                  "items": [
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/pathways/kegg"
                    },
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/pathways/reactome"
                    }
                  ]
                },
                {
                  "collapsed": true,
                  "type": "category",
                  "label": "Proteins",
                  "items": [
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/proteins/uniprot"
                    },
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/proteins/interpro"
                    }
                  ]
                },
                {
                  "collapsed": true,
                  "type": "category",
                  "label": "Publications",
                  "items": [
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/publications/pubmed"
                    },
                    {
                      "type": "doc",
                      "id": "database/data-sources/library/publications/publications"
                    }
                  ]
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/ncbi-gene"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/chado"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/fasta"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/gff"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/identifiers/index"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/intermine-items-xml"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/omim"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/organism"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/so"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/uberon"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/data-sources"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/data-sets"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/library/variation/vcf"
                }
              ]
            },
            {
              "type": "doc",
              "id": "database/data-sources/custom/index"
            },
            {
              "collapsed": true,
              "type": "category",
              "label": "InterMine Items XML",
              "items": [
                {
                  "type": "doc",
                  "id": "database/data-sources/apis/index"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/apis/java-items-api"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/apis/perl-items-api"
                },
                {
                  "type": "doc",
                  "id": "database/data-sources/apis/python-items-api"
                }
              ]
            },
            {
              "type": "doc",
              "id": "database/data-sources/id-resolvers"
            },
            {
              "type": "doc",
              "id": "database/data-sources/data-licences"
            }
          ]
        },
        {
          "collapsed": true,
          "type": "category",
          "label": "Database Building",
          "items": [
            {
              "type": "doc",
              "id": "database/database-building/index"
            },
            {
              "type": "doc",
              "id": "database/database-building/build-script"
            },
            {
              "type": "doc",
              "id": "database/database-building/project-xml"
            },
            {
              "type": "doc",
              "id": "database/database-building/data-integration"
            },
            {
              "type": "doc",
              "id": "database/database-building/model-merging"
            },
            {
              "type": "doc",
              "id": "database/database-building/primary-keys"
            },
            {
              "type": "doc",
              "id": "database/database-building/priority-config"
            },
            {
              "type": "doc",
              "id": "database/database-building/post-processing/index"
            },
            {
              "type": "doc",
              "id": "database/database-building/post-build-updating-with-sql-triggers"
            },
            {
              "type": "doc",
              "id": "database/database-building/debugging"
            }
          ]
        },
        {
          "collapsed": true,
          "type": "category",
          "label": "Data Integrity Checks",
          "items": [
            {
              "type": "doc",
              "id": "database/data-integrity-checks/template-comparison"
            },
            {
              "type": "doc",
              "id": "database/data-integrity-checks/acceptance-tests"
            }
          ]
        },
        {
          "collapsed": true,
          "type": "category",
          "label": "InterMine performance",
          "items": [
            {
              "type": "doc",
              "id": "database/performance/data-loading"
            },
            {
              "type": "doc",
              "id": "database/performance/precomputing"
            },
            {
              "type": "doc",
              "id": "database/performance/configuration"
            }
          ]
        }
      ]
    },
    {
      "collapsed": true,
      "type": "category",
      "label": "Web Application",
      "items": [
        {
          "type": "doc",
          "id": "webapp/bluegenes/index"
        },
        {
          "type": "doc",
          "id": "webapp/layout/index"
        },
        {
          "type": "doc",
          "id": "webapp/homepage/index"
        },
        {
          "collapsed": true,
          "type": "category",
          "label": "Report Page",
          "items": [
            {
              "type": "doc",
              "id": "webapp/report-page/permanentURL"
            }
          ]
        },
        {
          "collapsed": true,
          "type": "category",
          "label": "Lists",
          "items": [
            {
              "type": "doc",
              "id": "webapp/lists/lists-page"
            },
            {
              "type": "doc",
              "id": "webapp/lists/list-upload"
            },
            {
              "type": "doc",
              "id": "webapp/lists/list-upgrade"
            },
            {
              "collapsed": true,
              "type": "category",
              "label": "List widgets",
              "items": [
                {
                  "type": "doc",
                  "id": "webapp/lists/list-widgets/index"
                },
                {
                  "type": "doc",
                  "id": "webapp/lists/list-widgets/embedding"
                },
                {
                  "type": "doc",
                  "id": "webapp/lists/list-widgets/enrichment-widgets"
                }
              ]
            }
          ]
        },
        {
          "type": "doc",
          "id": "webapp/template-queries/index"
        },
        {
          "type": "doc",
          "id": "webapp/query-results/index"
        },
        {
          "type": "doc",
          "id": "webapp/query-builder/index"
        },
        {
          "type": "doc",
          "id": "webapp/keyword-search/index"
        },
        {
          "collapsed": true,
          "type": "category",
          "label": "Customise Web Application",
          "items": [
            {
              "type": "doc",
              "id": "webapp/properties/web-properties"
            },
            {
              "type": "doc",
              "id": "webapp/properties/oauth2"
            },
            {
              "type": "doc",
              "id": "webapp/properties/webconfig-model"
            },
            {
              "type": "doc",
              "id": "webapp/properties/class-keys"
            }
          ]
        },
        {
          "type": "doc",
          "id": "webapp/markup/index"
        },
        {
          "type": "doc",
          "id": "webapp/https"
        },
        {
          "type": "doc",
          "id": "webapp/jbrowse"
        },
        {
          "collapsed": true,
          "type": "category",
          "label": "Tool API",
          "items": [
            {
              "type": "doc",
              "id": "webapp/tool-api/overview"
            },
            {
              "type": "doc",
              "id": "webapp/tool-api/tutorial"
            },
            {
              "type": "doc",
              "id": "webapp/tool-api/specification"
            }
          ]
        },
        {
          "collapsed": true,
          "type": "category",
          "label": "Monitoring Site Usage",
          "items": [
            {
              "type": "doc",
              "id": "webapp/monitoring-site-usage/google-analytics"
            }
          ]
        },
        {
          "type": "doc",
          "id": "webapp/admin/index"
        },
        {
          "collapsed": true,
          "type": "category",
          "label": "User Accounts",
          "items": [
            {
              "type": "doc",
              "id": "webapp/user-accounts/userprofile"
            }
          ]
        },
        {
          "type": "doc",
          "id": "webapp/frictionless/index"
        }
      ]
    },
    {
      "collapsed": true,
      "type": "category",
      "label": "Web Services",
      "items": [
        {  
          "type": "doc",
          "id": "web-services/index"
        },
        {
          "type": "doc",
          "id": "web-services/intermine-properties"
        },
        {  
          "type": "doc",
          "id": "web-services/authentication"
        },
        {
          "type": "doc",
          "id": "web-services/diagnostic"
        },
        {
          "type": "doc",
          "id": "web-services/iodocs"
        }]
    },
    {
      "collapsed": true,
      "type": "category",
      "label": "Support",
      "items": [
        {
          "type": "doc",
          "id": "support/mailing-list"
        },
        {
          "type": "doc",
          "id": "support/troubleshooting-tips"
        }
      ]
    },
    {
      "collapsed": true,
      "type": "category",
      "label": "About Us",
      "items": [
        {
          "type": "doc",
          "id": "about/index"
        },
        {
          "type": "doc",
          "id": "about/contact-us"
        },
        {
          "type": "doc",
          "id": "about/privacy-policy"
        }
      ]
    }
  ]
}