parameter skip_read_preprocessing not supported

[kheinze]

Hi there,

I wanted to run the pipeline while skipping the preprocessing step. However, the RNAflow responds with "ERROR: Parameter(s) [skip_read_preprocessing] is/are not valid in the pipeline!" when I set "--skip_read_preprocessing true". I have tested it out with release versions 1.2.3 and 1.2.5, the error remains.

Is there a work-around for this problem or a new release version needed?

Best,
Karolin

[fischer-hub]

Hi @kheinze !
The skip_preprocessing feature was added after the last release, could you try to just pull the latest commit? That should definitely contain the feature!