EstimateCellCounts with EPIC V2 data

[kimberzhu]

Hi,
Im running into issues when using EstimateCellCounts to deconvolute blood cell types when using EPICV2 array data.

Running:

cellCounts <- estimateCellCounts(rgSet)

Gives me this error:

Error in .convertArray_450k_epic(rgSet = object, outType = outType, verbose = verbose) : 
  .is450k(rgSet) || .isEPIC(rgSet) is not TRUE

Is it because of my array/annotation being EPIC V2? Heres some info about my rgSet:

rgSetFlt
class: RGChannelSet
dim: 1105209 219
metadata(0):
assays(2): Green Red
rownames(1105209): 1600157 1600179 ... 99810982 99810990
rowData names(0):
colnames(219): 207925050049_R07C01 207882990112_R05C01 ...
207865030003_R05C01 207865030077_R04C01
colData names(15): Sample_Name Sample_Plate ... Basename filenames
Annotation
array: IlluminaHumanMethylationEPICv2
annotation: 20a1.hg38

Thanks in advance for any help!

[zwang072005]

Have you solve your problem? I have the same issure .