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This repository has been archived by the owner on Aug 28, 2023. It is now read-only.
I am using python version 3.8.5 on windows 10. Have been all day trying to excecute the comand "pip install" to install "RSeQC" module and the following error keeps appearing: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
According to similar issues from other people, I have tried all these commands already but the problem is not solved yet:
Here is the complete error so you can see it in detail
ERROR: Command errored out with exit status 1:
command: 'c:\users\santi\appdata\local\programs\python\python38\python.exe' -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\santi\\AppData\\Local\\Temp\\pip-install-asjskfsy\\pysam\\setup.py'"'"'; __file__='"'"'C:\\Users\\santi\\AppData\\Local\\Temp\\pip-install-asjskfsy\\pysam\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\santi\AppData\Local\Temp\pip-pip-egg-info-xflj54ps'
cwd: C:\Users\santi\AppData\Local\Temp\pip-install-asjskfsy\pysam\
Complete output (23 lines):
# pysam: no cython available - using pre-compiled C
# pysam: htslib mode is shared
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
"." no se reconoce como un comando interno o externo,
programa o archivo por lotes ejecutable.
"." no se reconoce como un comando interno o externo,
programa o archivo por lotes ejecutable.
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\santi\AppData\Local\Temp\pip-install-asjskfsy\pysam\setup.py", line 240, in <module>
htslib_make_options = run_make_print_config()
File "C:\Users\santi\AppData\Local\Temp\pip-install-asjskfsy\pysam\setup.py", line 68, in run_make_print_config
stdout = subprocess.check_output(["make", "-s", "print-config"])
File "c:\users\santi\appdata\local\programs\python\python38\lib\subprocess.py", line 411, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "c:\users\santi\appdata\local\programs\python\python38\lib\subprocess.py", line 489, in run
with Popen(*popenargs, **kwargs) as process:
File "c:\users\santi\appdata\local\programs\python\python38\lib\subprocess.py", line 854, in __init__
self._execute_child(args, executable, preexec_fn, close_fds,
File "c:\users\santi\appdata\local\programs\python\python38\lib\subprocess.py", line 1307, in _execute_child
hp, ht, pid, tid = _winapi.CreateProcess(executable, args,
FileNotFoundError: [WinError 2] El sistema no puede encontrar el archivo especificado
# pysam: htslib configure options: None
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
C:\Users\santi>python
Python 3.8.5 (tags/v3.8.5:580fbb0, Jul 20 2020, 15:57:54) [MSC v.1924 64 bit (AMD64)] on win32
Type "help", "copyright", "credits" or "license" for more information.
Hi!
I am using python version 3.8.5 on windows 10. Have been all day trying to excecute the comand "pip install" to install "RSeQC" module and the following error keeps appearing: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
According to similar issues from other people, I have tried all these commands already but the problem is not solved yet:
Here is the complete error so you can see it in detail
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
I have also tried to install homebrew using the following code: /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install.sh)" but another error appears:
C:\Users\santi>python
Python 3.8.5 (tags/v3.8.5:580fbb0, Jul 20 2020, 15:57:54) [MSC v.1924 64 bit (AMD64)] on win32
Type "help", "copyright", "credits" or "license" for more information.
(I am really new on this programming world so It's very hard for me to find solutions for this kind of problems)
Can anyone suggest a solution for this whole thing? Someone who can understand the main error in more detail to realize which is the exact problem?
Thank you very much!
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