conda.yaml

channels:
  - bioconda
  - conda-forge
dependencies:
  - _r-mutex=1.0.1
  - alabaster=0.7.13
  - amply=0.1.6
  - anyio=3.7.1
  - appdirs=1.4.4
  - appnope=0.1.3
  - argon2-cffi=23.1.0
  - argon2-cffi-bindings=21.2.0
  - arrow=1.2.3
  - asttokens=2.2.1
  - async-lru=2.0.4
  - attrs=23.1.0
  - babel=2.12.1
  - backcall=0.2.0
  - backports=1.0
  - backports.functools_lru_cache=1.6.5
  - beautifulsoup4=4.12.2
  - bleach=6.0.0
  - brotli=1.0.9
  - brotli-bin=1.0.9
  - brotli-python=1.0.9
  - bwidget=1.9.14
  - bzip2=1.0.8
  - c-ares=1.19.1
  - ca-certificates=2023.7.22
  - cached-property=1.5.2
  - cached_property=1.5.2
  - cairo=1.16.0
  - cattrs=23.1.2
  - certifi=2023.7.22
  - cffi=1.15.1
  - charset-normalizer=3.2.0
  - coin-or-cbc=2.10.10
  - coin-or-cgl=0.60.7
  - coin-or-clp=1.17.8
  - coin-or-osi=0.108.8
  - coin-or-utils=2.11.9
  - coincbc=2.10.10
  - colorama=0.4.6
  - comm=0.1.4
  - configargparse=1.7
  - connection_pool=0.0.3
  - contourpy=1.1.0
  - coverage=7.3.0
  - curl=8.2.1
  - cycler=0.11.0
  - datrie=0.8.2
  - debugpy=1.6.8
  - decorator=5.1.1
  - docutils=0.17.1
  - dpath=2.1.6
  - entrypoints=0.4
  - esbonio=0.16.1
  - exceptiongroup=1.1.3
  - executing=1.2.0
  - expat=2.5.0
  - flit=3.9.0
  - flit-core=3.9.0
  - font-ttf-dejavu-sans-mono=2.37
  - font-ttf-inconsolata=3.000
  - font-ttf-source-code-pro=2.038
  - font-ttf-ubuntu=0.83
  - fontconfig=2.14.2
  - fonts-conda-ecosystem=1
  - fonts-conda-forge=1
  - fonttools=4.42.1
  - fqdn=1.5.1
  - freetype=2.12.1
  - fribidi=1.0.10
  - gettext=0.21.1
  - gitdb=4.0.10
  - gitpython=3.1.32
  - gmp=6.2.1
  - graphite2=1.3.13
  - gsl=2.7
  - harfbuzz=7.3.0
  - humanfriendly=10.0
  - icu=72.1
  - idna=3.4
  - imagesize=1.4.1
  - importlib-metadata=6.8.0
  - importlib_metadata=6.8.0
  - importlib_resources=6.0.1
  - iniconfig=2.0.0
  - ipykernel=6.25.1
  - ipython=8.14.0
  - isl=0.25
  - isoduration=20.11.0
  - jedi=0.19.0
  - jinja2=3.1.2
  - joblib=1.3.2
  - json5=0.9.14
  - jsonpointer=2.0
  - jsonschema=4.19.0
  - jsonschema-specifications=2023.7.1
  - jsonschema-with-format-nongpl=4.19.0
  - jupyter-lsp=2.2.0
  - jupyter_client=8.3.0
  - jupyter_core=5.3.1
  - jupyter_events=0.7.0
  - jupyter_server=2.7.1
  - jupyter_server_terminals=0.4.4
  - jupyterlab=4.0.5
  - jupyterlab_pygments=0.2.2
  - jupyterlab_server=2.24.0
  - jupytext=1.15.0
  - kiwisolver=1.4.5
  - krb5=1.21.2
  - lcms2=2.15
  - lerc=4.0.0
  - lsprotocol=2023.0.0a2
  - make=4.3
  - markdown-it-py=3.0.0
  - markupsafe=2.1.3
  - matplotlib-base=3.7.2
  - matplotlib-inline=0.1.6
  - mdit-py-plugins=0.4.0
  - mdurl=0.1.0
  - mistune=3.0.1
  - mpc=1.3.1
  - mpfr=4.2.0
  - munkres=1.1.4
  - nbclient=0.8.0
  - nbconvert-core=7.7.4
  - nbformat=5.9.2
  - ncurses=6.4
  - nest-asyncio=1.5.6
  - notebook-shim=0.2.3
  - numpy=1.25.2
  - openjpeg=2.5.0
  - openssl=3.1.2
  - overrides=7.4.0
  - packaging=23.1
  - pandas=2.0.3
  - pandocfilters=1.5.0
  - pango=1.50.14
  - parse=1.19.1
  - parso=0.8.3
  - pcre2=10.40
  - pexpect=4.8.0
  - pickleshare=0.7.5
  - pillow=10.0.0
  - pip=23.2.1
  - pixman=0.40.0
  - pkgutil-resolve-name=1.3.10
  - plac=1.3.5
  - platformdirs=3.10.0
  - pluggy=1.2.0
  - pooch=1.7.0
  - prometheus_client=0.17.1
  - prompt-toolkit=3.0.39
  - prompt_toolkit=3.0.39
  - psutil=5.9.5
  - pthread-stubs=0.4
  - ptyprocess=0.7.0
  - pulp=2.7.0
  - pure_eval=0.2.2
  - pycparser=2.21
  - pygls=1.0.2
  - pygments=2.16.1
  - pyparsing=3.0.9
  - pysocks=1.7.1
  - pyspellchecker=0.7.2
  - pytest=7.4.0
  - pytest-cov=4.1.0
  - python=3.11.4
  - python-dateutil=2.8.2
  - python-fastjsonschema=2.18.0
  - python-json-logger=2.0.7
  - python-tzdata=2023.3
  - python_abi=3.11
  - pytz=2023.3
  - pyyaml=6.0.1
  - pyzmq=25.1.1
  - r-base=4.3.1
  - r-cli=3.6.1
  - r-colorspace=2.1_0
  - r-crayon=1.5.2
  - r-dplyr=1.1.2
  - r-ellipsis=0.3.2
  - r-fansi=1.0.4
  - r-farver=2.1.1
  - r-generics=0.1.3
  - r-ggplot2=3.4.3
  - r-glue=1.6.2
  - r-gtable=0.3.4
  - r-isoband=0.2.7
  - r-labeling=0.4.2
  - r-lattice=0.21_8
  - r-lifecycle=1.0.3
  - r-magrittr=2.0.3
  - r-mass=7.3_60
  - r-matrix=1.6_1
  - r-mgcv=1.9_0
  - r-munsell=0.5.0
  - r-nlme=3.1_163
  - r-pillar=1.9.0
  - r-pkgconfig=2.0.3
  - r-plyr=1.8.8
  - r-r6=2.5.1
  - r-rcolorbrewer=1.1_3
  - r-rcpp=1.0.11
  - r-reshape2=1.4.4
  - r-rlang=1.1.1
  - r-scales=1.2.1
  - r-stringi=1.7.12
  - r-stringr=1.5.0
  - r-tibble=3.2.1
  - r-tidyselect=1.2.0
  - r-utf8=1.2.3
  - r-vctrs=0.6.3
  - r-viridislite=0.4.2
  - r-withr=2.5.0
  - readline=8.2
  - referencing=0.30.2
  - requests=2.31.0
  - reretry=0.11.8
  - rfc3339-validator=0.1.4
  - rfc3986-validator=0.1.1
  - rpds-py=0.9.2
  - scikit-learn=1.3.0
  - scipy=1.11.2
  - send2trash=1.8.2
  - setuptools=68.1.2
  - sigtool=0.1.3
  - six=1.16.0
  - smart_open=6.3.0
  - smmap=3.0.5
  - snakemake-minimal=7.32.3
  - sniffio=1.3.0
  - snowballstemmer=2.2.0
  - soupsieve=2.3.2.post1
  - sphinx=5.3.0
  - sphinx-autodoc-typehints=1.21.8
  - sphinx_rtd_theme=1.3.0
  - sphinxcontrib-applehelp=1.0.7
  - sphinxcontrib-devhelp=1.0.5
  - sphinxcontrib-htmlhelp=2.0.4
  - sphinxcontrib-jquery=4.1
  - sphinxcontrib-jsmath=1.0.1
  - sphinxcontrib-qthelp=1.0.6
  - sphinxcontrib-serializinghtml=1.1.9
  - stack_data=0.6.2
  - stopit=1.1.2
  - tabulate=0.9.0
  - tapi=1100.0.11
  - terminado=0.17.1
  - threadpoolctl=3.2.0
  - throttler=1.2.2
  - tinycss2=1.2.1
  - tk=8.6.12
  - tktable=2.10
  - toml=0.10.2
  - tomli=2.0.1
  - tomli-w=1.0.0
  - toposort=1.10
  - tornado=6.3.3
  - traitlets=5.9.0
  - typeguard=3.0.2
  - typing-extensions=4.7.1
  - typing_extensions=4.7.1
  - typing_utils=0.1.0
  - tzdata=2023c
  - uri-template=1.3.0
  - urllib3=2.0.4
  - wcwidth=0.2.6
  - webcolors=1.13
  - webencodings=0.5.1
  - websocket-client=1.6.2
  - wheel=0.41.2
  - wrapt=1.15.0
  - xorg-kbproto=1.0.7
  - xorg-renderproto=0.11.1
  - xorg-xextproto=7.3.0
  - xorg-xproto=7.0.31
  - xz=5.2.6
  - yaml=0.2.5
  - yte=1.5.1
  - zeromq=4.3.4
  - zipp=3.16.2
  - zlib=1.2.13
  - zstd=1.5.2
  - pip: