You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
We get the following error message and stack trace:
% seqmagick backtrans-align sorted_aligned_inseqs_translation.fasta sorted_inseqs.fasta -o test.fa 17-01-20 - 12:59:13
Traceback (most recent call last):
File "/app/seqmagick/0.6.0/bin/seqmagick", line 9, in <module>
load_entry_point('seqmagick==0.6.0', 'console_scripts', 'seqmagick')()
...
File "/app/seqmagick/0.6.0/lib/python2.7/site-packages/seqmagick-0.6.0-py2.7.egg/seqmagick/subcommands/backtrans_align.py", line 108, in <genexpr>
for codon in codons)
File "/app/python2/2.7.8/lib/python2.7/site-packages/Bio/Data/CodonTable.py", line 304, in get
return self.__getitem__(codon)
...
File "/app/python2/2.7.8/lib/python2.7/site-packages/Bio/Data/CodonTable.py", line 185, in list_possible_proteins
c1, c2, c3 = codon
ValueError: need more than 1 value to unpack
I can confirm that when I cut off the extra nucleotides, the back translation operates without error.
At the very least, it would seem to be worth presenting a more helpful error message. Better yet though, we could either do this trimming automatically (with a warning), or add a flag for triggering this behavior.
The text was updated successfully, but these errors were encountered:
We get the following error message and stack trace:
I can confirm that when I cut off the extra nucleotides, the back translation operates without error.
At the very least, it would seem to be worth presenting a more helpful error message. Better yet though, we could either do this trimming automatically (with a warning), or add a flag for triggering this behavior.
The text was updated successfully, but these errors were encountered: