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gendocs.sh
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gendocs.sh
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#!/bin/sh
#============================================================
# iso2mesh inline documentation to wiki convertor
#
# Author: Qianqian Fang <q.fang at neu.edu>
#============================================================
printhelp=$1
if [ "$#" -ge 1 ]; then
echo "iso2mesh >> Iso2Mesh"
fi
print_help()
{
if [ -z "$printhelp" ]; then
awk '/^%/ {dp=1} /-- this function is part of iso2mesh/ {exit} \
/ this function is part of / {exit} \
/ this file is part of / {exit} \
/^function/ {dp=1} /./ {if(dp==1) print;}' $1 \
| grep -v 'Qianqian' | grep -v 'date:' | #grep -v '^%\s*$'| \
sed -e 's/^%//g' -e 's/^function\(.*$\)/\n==== function\1 ====/g'
else
echo " $1" | sed -e 's/\.m$//g'
fi
}
print_group()
{
for fun in $@
do
print_help $fun.m
done
}
print_title ()
{
if [ -z "$printhelp" ]; then
echo "=== # $@ ==="
else
echo $@
fi
}
func_shortcut="v2m v2s s2m s2v m2v sms i2m"
func_mainfun="vol2mesh vol2surf surf2mesh surf2vol mesh2vol img2mesh"
func_backend="binsurface cgalv2m cgals2m vol2restrictedtri surf2volz mesh2mask"
func_primitive="meshabox meshasphere meshanellip meshunitsphere meshacylinder
meshgrid5 meshgrid6 latticegrid extrudecurve meshcylinders"
func_inquery="finddisconnsurf surfedge volface extractloops meshconn
meshcentroid nodevolume elemvolume neighborelem layersurf
faceneighbors edgeneighbors maxsurf flatsegment orderloopedge
mesheuler bbxflatsegment surfplane surfinterior surfpart
surfseeds meshquality meshedge meshface surfacenorm nodesurfnorm
uniqedges uniqfaces advancefront innersurf outersurf surfvolume
insurface"
func_meshfix="meshcheckrepair meshreorient removedupelem
removedupnodes removeisolatednode removeisolatedsurf
surfaceclean getintersecttri delendelem surfreorient"
func_metch="proj2mesh dist2surf regpt2surf affinemap metchgui metchgui_one"
func_remesh="meshresample remeshsurf smoothsurf sortmesh mergemesh
meshrefine mergesurf surfboolean fillsurf highordertet
elemfacecenter barydualmesh meshinterp meshremap extrudesurf"
func_polyline="slicesurf slicesurf3 polylinelen polylinesimplify polylineinterp closestnode"
func_fileio="saveasc savedxf savestl savebinstl saveinr saveoff
savesmf savesurfpoly savegts readgts savemsh
savevrml readasc readinr readmedit readoff readsmf
readtetgen deletemeshfile mcpath mwpath savemedit
savejson loadjson saveubjson loadubjson loadmsgpack savemsgpack
savebj loadbj savemphtxt savetetgenele savetetgennode saveabaqus
savenirfast readnirfast readnifti readmptiff"
func_jdata="savejmesh loadjnifti savejnifti loadnifti savenifti jdataencode
jdatadecode jload jsave decodevarname encodevarname jnifticreate
nifticreate nii2jnii jnii2nii niicodemap niiformat savebnii savejnii"
func_compression="zlibencode zlibdecode gzipencode gzipdecode lzmaencode
lzmadecode lzipencode lzipdecode lz4encode lz4decode lz4hcencode
lz4hcdecode base64decode base64encode"
func_binimage="bwislands fillholes3d deislands2d deislands3d ndgaussian ndimfilter
imedge3d internalpoint smoothbinvol
thickenbinvol thinbinvol maskdist"
func_plotting="plotmesh plotsurf plottetra plotedges qmeshcut"
func_misc="surfdiffuse volmap2mesh isoctavemesh getvarfrom raytrace linextriangle
getplanefrom3pt getexeext fallbackexeext iso2meshver
raysurf getoptkey rotatevec3d rotmat2vec varargin2struct
jsonopt mergestruct orthdisk nestbracket2dim fast_match_bracket
match_bracket memmapstream"
print_title Streamlined mesh generation - shortcuts
print_group $func_shortcut
print_title Streamlined mesh generation
print_group $func_mainfun
print_title Iso2mesh main function backend
print_group $func_backend
print_title Iso2mesh primitive meshing functions
print_group $func_primitive
print_title Mesh decomposition and query
print_group $func_inquery
print_title Mesh processing and reparing
print_group $func_meshfix
print_title Mesh registration - Metch Toolbox
print_group $func_metch
print_title Polyline handling
print_group $func_polyline
print_title Mesh resampling and optimization
print_group $func_remesh
print_title File I/O
print_group $func_fileio
print_title JData functions
print_group $func_jdata
print_title Data compression
print_group $func_compression
print_title Volumetric image pre-processing
print_group $func_binimage
print_title Mesh plotting
print_group $func_plotting
print_title Miscellaneous functions
print_group $func_misc