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Quantification Fails #2
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Hihi, It looks like something is wrong with either the R library or the data itself. Do you have the post-alignment file? Best, |
Hi, |
@yangwh1998 Please consider using docker to run scasa to avoid the issue of installing the dependencies. How to run scasa with docker is provided here: Best, |
Hi,
Thank you for the tool. I am using it for isoform quantification. As a test run I am testing it on one sample from 10xV2.
The command that I am using
scasa --fastq ERX3806131/4861STDY7462259_R1.fastq.gz,ERX3806131/4861STDY7462259_R2.fastq.gz --ref $refPath --nthreads 8 --out Scasa_out
Processing message that I get
The ERROR that I am getting as soon as the quantification step starts is below
I have installed all the R packages and I am not sure why the quantification is not being performed.
Could you please help.
Thank you
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