packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2021},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2022},
  note = {https://github.com/rstudio/bookdown},
}

@Manual{R-corrplot,
  title = {corrplot: Visualization of a Correlation Matrix},
  author = {Taiyun Wei and Viliam Simko},
  year = {2021},
  note = {R package version 0.92},
  url = {https://github.com/taiyun/corrplot},
}

@Manual{R-dslabs,
  title = {dslabs: Data Science Labs},
  author = {Rafael A. Irizarry and Amy Gill},
  year = {2021},
  note = {R package version 0.7.4},
  url = {https://CRAN.R-project.org/package=dslabs},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2022},
  note = {R package version 3.3.6},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-ggrepel,
  title = {ggrepel: Automatically Position Non-Overlapping Text Labels with
ggplot2},
  author = {Kamil Slowikowski},
  year = {2021},
  note = {R package version 0.9.1},
  url = {https://github.com/slowkow/ggrepel},
}

@Manual{R-HSAUR2,
  title = {HSAUR2: A Handbook of Statistical Analyses Using R (2nd Edition)},
  author = {Brian S. Everitt and Torsten Hothorn},
  year = {2022},
  note = {R package version 1.1-19},
  url = {https://CRAN.R-project.org/package=HSAUR2},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2022},
  note = {R package version 1.39},
  url = {https://yihui.org/knitr/},
}

@Manual{R-MVA,
  title = {MVA: An Introduction to Applied Multivariate Analysis with R},
  author = {Brian S. Everitt and Torsten Hothorn},
  year = {2022},
  note = {R package version 1.0-8},
  url = {http://dx.doi.org/10.1007/978-1-4419-9650-3},
}

@Manual{R-pheatmap,
  title = {pheatmap: Pretty Heatmaps},
  author = {Raivo Kolde},
  year = {2019},
  note = {R package version 1.0.12},
  url = {https://CRAN.R-project.org/package=pheatmap},
}

@Manual{R-rafalib,
  title = {rafalib: Convenience Functions for Routine Data Exploration},
  author = {Rafael A. Irizarry and Michael I. Love},
  year = {2015},
  note = {R package version 1.0.0},
  url = {https://CRAN.R-project.org/package=rafalib},
}

@Manual{R-RColorBrewer,
  title = {RColorBrewer: ColorBrewer Palettes},
  author = {Erich Neuwirth},
  year = {2014},
  note = {R package version 1.1-2},
  url = {https://CRAN.R-project.org/package=RColorBrewer},
}

@Manual{R-reshape2,
  title = {reshape2: Flexibly Reshape Data: A Reboot of the Reshape Package},
  author = {Hadley Wickham},
  year = {2020},
  note = {R package version 1.4.4},
  url = {https://github.com/hadley/reshape},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2022},
  note = {R package version 2.14},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Manual{R-rvest,
  title = {rvest: Easily Harvest (Scrape) Web Pages},
  author = {Hadley Wickham},
  year = {2021},
  note = {R package version 1.0.2},
  url = {https://CRAN.R-project.org/package=rvest},
}

@Manual{R-wordcloud,
  title = {wordcloud: Word Clouds},
  author = {Ian Fellows},
  year = {2018},
  note = {R package version 2.6},
  url = {https://CRAN.R-project.org/package=wordcloud},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Manual{corrplot2021,
  title = {R package 'corrplot': Visualization of a Correlation Matrix},
  author = {Taiyun Wei and Viliam Simko},
  year = {2021},
  note = {(Version 0.92)},
  url = {https://github.com/taiyun/corrplot},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Article{reshape22007,
  title = {Reshaping Data with the {reshape} Package},
  author = {Hadley Wickham},
  journal = {Journal of Statistical Software},
  year = {2007},
  volume = {21},
  number = {12},
  pages = {1--20},
  url = {http://www.jstatsoft.org/v21/i12/},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  note = {ISBN 9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}