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EDAM browser for non-EDAM ontologies #235

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jaygray0919 opened this issue Feb 2, 2023 · 0 comments
Open

EDAM browser for non-EDAM ontologies #235

jaygray0919 opened this issue Feb 2, 2023 · 0 comments

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@jaygray0919
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We would like to use the EDAM Browser for other ontologies.
An example is Semanticscience Integrated Ontology (SIO)
https://ontobee.org/ontology/SIO

Can you point me to a non-EDAM example that we could emulate?

Our content is close to the form expected by the EDAM Browser.
For example, here is a D3 dendrogram for SIO
https://afdsi.com/_talent/truett-d3/_dendrogram-SIO/

Here is the JSON structure used by the dendrogram:
https://afdsi.com/_talent/truett-d3/_dendrogram-SIO/data.max.json

Our plan is to update the JSON for NULL fields; e.g. updating the SIO JSON to include content similar to EDAM properties and attributes.

We don't plan to tackle the Gene Ontology or similarly large ontologies.
We basically want to update select ontologies to "look like" the EDAM ontology in the EDAM browser.

Many thanks for assistance here.

/jay

@jaygray0919 jaygray0919 changed the title EDAM browser for non_EDAM ontologies EDAM browser for non-EDAM ontologies Feb 2, 2023
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