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Running CSIDE on across multiple tissue sections #213

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suerle opened this issue Oct 8, 2024 · 0 comments
Open

Running CSIDE on across multiple tissue sections #213

suerle opened this issue Oct 8, 2024 · 0 comments

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@suerle
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suerle commented Oct 8, 2024

Thanks for providing this amazing tool!

I was wondering if there is a way to infer cell-type-specific DEGs using CSIDE across multiple Visium tissue sections after running RCTD individually on each section to infer cell type composition?

Thanks for a feedback and all the best!
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@suerle