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environment.yml
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environment.yml
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name: IPD-converter
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _r-mutex=1.0.0=anacondar_1
- biopython=1.83=py312h41838bb_0
- blas=1.0=openblas
- bottleneck=1.3.7=py312h32608ca_0
- bwidget=1.9.16=h6066b31_0
- bzip2=1.0.8=h6c40b1e_5
- c-ares=1.19.1=h6c40b1e_0
- ca-certificates=2023.12.12=hecd8cb5_0
- cairo=1.16.0=h3ce6f7e_5
- cctools_osx-64=973.0.1=h031c385_16
- clang=17.0.6=hac416ee_2
- clang-17=17.0.6=default_h6b1ee41_2
- clang_impl_osx-64=17.0.6=h1af8efd_10
- clang_osx-64=17.0.6=hb91bd55_10
- clangxx=17.0.6=default_h6b1ee41_2
- clangxx_impl_osx-64=17.0.6=hc3430b7_10
- clangxx_osx-64=17.0.6=hb91bd55_10
- compiler-rt=17.0.6=ha38d28d_1
- compiler-rt_osx-64=17.0.6=ha38d28d_1
- coreutils=8.25=1
- curl=7.88.1=h04015c4_2
- expat=2.5.0=hcec6c5f_0
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- font-ttf-inconsolata=2.001=hcb22688_0
- font-ttf-source-code-pro=2.030=hd3eb1b0_0
- font-ttf-ubuntu=0.83=h8b1ccd4_0
- fontconfig=2.14.2=h5bb23bf_0
- fonts-anaconda=1=h8fa9717_0
- fonts-conda-ecosystem=1=hd3eb1b0_0
- freetype=2.12.1=hd8bbffd_0
- fribidi=1.0.10=haf1e3a3_0
- gettext=0.21.1=h8a4c099_0
- gfortran_impl_osx-64=11.3.0=h29cdc64_28
- gfortran_osx-64=11.3.0=h96634ac_0
- glib=2.78.1=hf4d7fad_0
- glib-tools=2.78.1=hf4d7fad_0
- gmp=6.3.0=h93d8f39_0
- graphite2=1.3.14=he9d5cce_1
- gsl=2.7.1=hdbe807d_1
- harfbuzz=7.3.0=h413ba03_0
- icu=72.1=h7336db1_0
- isl=0.22.1=he9d5cce_3
- java-jdk=8.0.112=1
- krb5=1.20.1=h428f121_1
- ld64_osx-64=609=hd3532be_16
- lerc=4.0.0=hb486fe8_0
- libblas=3.9.0=21_osx64_openblas
- libclang-cpp17=17.0.6=default_h6b1ee41_2
- libcurl=7.88.1=hf20ceda_2
- libcxx=16.0.6=hd57cbcb_0
- libdeflate=1.17=hb664fd8_1
- libedit=3.1.20230828=h6c40b1e_0
- libev=4.33=h9ed2024_1
- libexpat=2.5.0=hf0c8a7f_1
- libffi=3.4.4=hecd8cb5_0
- libgfortran=5.0.0=13_2_0_h97931a8_3
- libgfortran-devel_osx-64=11.3.0=h9dfd629_28
- libgfortran5=13.2.0=h2873a65_3
- libglib=2.78.1=h6d9ecee_0
- libiconv=1.17=hd75f5a5_2
- libjpeg-turbo=2.1.5.1=h0dc2134_1
- liblapack=3.9.0=21_osx64_openblas
- libllvm17=17.0.6=h7090790_0
- libnghttp2=1.57.0=h9beae6a_0
- libopenblas=0.3.26=openmp_hfef2a42_0
- libpng=1.6.43=h92b6c6a_0
- libsqlite=3.45.1=h92b6c6a_0
- libssh2=1.10.0=h04015c4_2
- libtiff=4.5.0=hd920806_5
- libwebp-base=1.3.2=h6c40b1e_0
- libxml2=2.11.5=hd95e348_0
- libzlib=1.2.13=h8a1eda9_5
- llvm-openmp=17.0.6=hb6ac08f_0
- llvm-tools=17.0.6=hbae1577_0
- lz4-c=1.9.4=hcec6c5f_0
- make=4.2.1=h3efe00b_1
- mpc=1.3.1=h81bd1dd_0
- mpfr=4.2.1=h0c69b56_0
- ncurses=6.4=hcec6c5f_0
- numexpr=2.8.7=py312h7d6adbd_0
- numpy=1.26.4=py312h7d6adbd_0
- numpy-base=1.26.4=py312hbb3573c_0
- openjdk=8.0.112=zulu8.19.0.1_3
- openssl=3.2.1=hd75f5a5_0
- pandoc=2.12=hecd8cb5_3
- pango=1.50.14=hbce5e75_1
- pcre2=10.40=h1c4e4bc_0
- pip=23.3.1=py312hecd8cb5_0
- pixman=0.43.4=h73e2aa4_0
- psutil=5.9.0=py312h6c40b1e_0
- python=3.12.2=h9f0c242_0_cpython
- python_abi=3.12=4_cp312
- r-askpass=1.2.0=r42h6dc245f_0
- r-backports=1.4.1=r42h6dc245f_2
- r-base=4.2.3=h29e1f52_2
- r-base64enc=0.1_3=r42h6dc245f_1006
- r-bit=4.0.5=r42h6dc245f_1
- r-bit64=4.0.5=r42h6dc245f_2
- r-blob=1.2.3=r42h6115d3f_0
- r-broom=1.0.5=r42hc72bb7e_1
- r-bslib=0.5.1=r42h6115d3f_0
- r-cachem=1.0.8=r42h6dc245f_1
- r-callr=3.7.0=r42h6115d3f_0
- r-cellranger=1.1.0=r42h6115d3f_0
- r-cli=3.6.2=r42h64b2c41_0
- r-clipr=0.8.0=r42h6115d3f_0
- r-colorspace=2.1_0=r42h6dc245f_1
- r-conflicted=1.2.0=r42h785f33e_1
- r-cpp11=0.4.2=r42h6115d3f_0
- r-crayon=1.5.1=r42h6115d3f_0
- r-curl=4.3.3=r42h815d134_1
- r-data.table=1.15.2=r42he044350_0
- r-dbi=1.1.2=r42h6115d3f_0
- r-dbplyr=2.4.0=r42hc72bb7e_0
- r-digest=0.6.34=r42h29979af_0
- r-dplyr=1.1.4=r42h64b2c41_0
- r-dtplyr=1.3.1=r42hc72bb7e_1
- r-ellipsis=0.3.2=r42h6dc245f_2
- r-evaluate=0.22=r42h6115d3f_0
- r-fansi=1.0.6=r42hb2c329c_0
- r-farver=2.1.1=r42hac7d2d5_2
- r-fastmap=1.1.1=r42hac7d2d5_1
- r-fontawesome=0.5.2=r42h6115d3f_0
- r-forcats=1.0.0=r42hc72bb7e_1
- r-fs=1.6.3=r42hac7d2d5_0
- r-gargle=1.2.0=r42h142f84f_0
- r-generics=0.1.2=r42h142f84f_0
- r-ggplot2=3.5.0=r42hc72bb7e_0
- r-glue=1.7.0=r42hb2c329c_0
- r-googledrive=2.0.0=r42h6115d3f_0
- r-googlesheets4=1.1.1=r42h785f33e_1
- r-gtable=0.3.0=r42h6115d3f_0
- r-haven=2.5.4=r42h64b2c41_0
- r-highr=0.9=r42h6115d3f_0
- r-hms=1.1.3=r42hc72bb7e_1
- r-htmltools=0.5.7=r42h64b2c41_0
- r-httr=1.4.7=r42hc72bb7e_0
- r-ids=1.0.1=r42h142f84f_0
- r-isoband=0.2.7=r42hac7d2d5_2
- r-jquerylib=0.1.4=r42h6115d3f_0
- r-jsonlite=1.8.8=r42hb2c329c_0
- r-knitr=1.44=r42h6115d3f_0
- r-labeling=0.4.2=r42h6115d3f_0
- r-lattice=0.22_5=r42hb2c329c_0
- r-lifecycle=1.0.4=r42hc72bb7e_0
- r-lubridate=1.9.3=r42h6dc245f_0
- r-magrittr=2.0.3=r42h6dc245f_2
- r-mass=7.3_60.0.1=r42hb2c329c_0
- r-matrix=1.6_5=r42h39411cf_0
- r-memoise=2.0.1=r42h6115d3f_0
- r-mgcv=1.9_1=r42hc8b66e8_0
- r-mime=0.12=r42h6dc245f_2
- r-modelr=0.1.11=r42hc72bb7e_1
- r-munsell=0.5.0=r42h6115d3f_0
- r-nlme=3.1_164=r42hed23af9_0
- r-openssl=2.1.1=r42hc61a7e2_0
- r-pillar=1.9.0=r42hc72bb7e_1
- r-pkgconfig=2.0.3=r42h6115d3f_0
- r-prettyunits=1.1.1=r42h142f84f_0
- r-processx=3.8.3=r42hb2c329c_0
- r-progress=1.2.2=r42h142f84f_0
- r-ps=1.7.6=r42hb2c329c_0
- r-purrr=1.0.2=r42h6dc245f_0
- r-r6=2.5.1=r42h6115d3f_0
- r-ragg=1.2.5=r42he54449d_1
- r-rappdirs=0.3.3=r42h6dc245f_2
- r-rcolorbrewer=1.1_3=r42h6115d3f_0
- r-rcpp=1.0.12=r42h29979af_0
- r-readr=2.1.5=r42h29979af_0
- r-readxl=1.4.3=r42h88814b1_0
- r-rematch=1.0.1=r42h6115d3f_0
- r-rematch2=2.1.2=r42h142f84f_0
- r-reprex=2.1.0=r42hc72bb7e_0
- r-rlang=1.1.3=r42h29979af_0
- r-rmarkdown=2.25=r42h6115d3f_0
- r-rstudioapi=0.15.0=r42hc72bb7e_0
- r-rvest=1.0.4=r42hc72bb7e_0
- r-sass=0.4.8=r42h64b2c41_0
- r-scales=1.2.0=r42h6115d3f_0
- r-selectr=0.4_2=r42h6115d3f_0
- r-stringi=1.7.12=r42hf939c12_2
- r-stringr=1.5.1=r42h785f33e_0
- r-sys=3.4.2=r42h6dc245f_1
- r-systemfonts=1.0.5=r42hac8360d_0
- r-textshaping=0.3.6=r42heedee68_6
- r-tibble=3.2.1=r42h6dc245f_2
- r-tidyr=1.3.1=r42h29979af_0
- r-tidyselect=1.2.0=r42hbe3e9c8_1
- r-tidyverse=2.0.0=r42h785f33e_1
- r-timechange=0.3.0=r42h29979af_0
- r-tinytex=0.48=r42h142f84f_0
- r-tzdb=0.4.0=r42hac7d2d5_1
- r-utf8=1.2.4=r42hb2c329c_0
- r-uuid=1.2_0=r42hb2c329c_0
- r-vctrs=0.6.5=r42h64b2c41_0
- r-viridislite=0.4.0=r42h6115d3f_0
- r-vroom=1.6.5=r42h64b2c41_0
- r-withr=2.5.0=r42h6115d3f_0
- r-xfun=0.42=r42h29979af_0
- r-xml2=1.3.5=r42h2e0d1c5_0
- r-yaml=2.3.8=r42hb2c329c_0
- readline=8.2=hca72f7f_0
- setuptools=68.2.2=py312hecd8cb5_0
- sigtool=0.1.3=h88f4db0_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.41.2=h6c40b1e_0
- tapi=1100.0.11=h1527ee5_1
- tk=8.6.13=h1abcd95_1
- tktable=2.10=h032784e_1
- wheel=0.41.2=py312hecd8cb5_0
- xz=5.4.6=h6c40b1e_0
- zlib=1.2.13=h8a1eda9_5
- zstd=1.5.5=hc035e20_0
- pip:
- bio==1.6.2
- biothings-client==0.3.1
- certifi==2024.2.2
- charset-normalizer==3.3.2
- gprofiler-official==1.0.0
- idna==3.6
- jinja2==3.1.3
- markupsafe==2.1.5
- mygene==3.2.2
- nextflow==23.10.1
- packaging==23.2
- pandas==2.2.1
- pathlib==1.0.1
- pdoc==14.4.0
- platformdirs==4.2.0
- pooch==1.8.1
- pygments==2.17.2
- python-dateutil==2.9.0.post0
- pytz==2024.1
- requests==2.31.0
- ruff==0.3.0
- tqdm==4.66.2
- tzdata==2024.1
- urllib3==2.2.1
prefix: /Users/nicholasminor/miniconda3/envs/IPD-converter