Adding Data Preparation Code

[gwaybio]

Code to process data posted on figshare (https://figshare.com/s/f41918598b1ff5116825) should be added to this repo.

Please add code to to a new (and the first) analysis module (named 0.process-data)

[wagenrace]

I want to help with this. What do you mean by the analysis module?

[gwaybio]

Great! Thanks @wagenrace

What do you mean by the analysis module?

We will use github to store reproducible analyses in "modules". Basically, "modules" are just folders that contain one specific analysis. here's an example of an analysis module repository in the wild.

The specific process data module I'm referring to in this issue is related to work that @fheigwer already performed - so probably no need to help with this module specifically

[wagenrace]

A thanks, I understand what you mean with modules. Will he make it for python and/or R? And will there be a need for both?

[gwaybio]

Both

[wagenrace]

@fheigwer can I write the python part?

[wagenrace]

btw, can the model be called something else as 0.process-data?
The digit at the start, dot in the name and - make it hard to import a module from that path

[fheigwer]

Sure Am 05.11.2019 um 20:33 schrieb wagenrace <[email protected]<mailto:[email protected]>>: @fheigwer<https://github.com/fheigwer> can I write the python part? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#4?email_source=notifications&email_token=ABAJUGM737NMLXI5S6NXZC3QSG76BA5CNFSM4JIVMPD2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEDD6S6Y#issuecomment-549972347>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ABAJUGOGAMAQINUNRXDBJFLQSG76BANCNFSM4JIVMPDQ>.

[pearsy]

I can help with this (in R) if needed, or any data prep/processing (in R). Just let me know.
Best,
Yanthe

[gwaybio]

Thanks for your interest and offer @pearsy - I recommend scanning the issues labeled with good first issue and see where you'd like to contribute.

[pearsy]

OK, will do!

…

On Tue, Dec 10, 2019 at 2:44 PM Greg Way ***@***.***> wrote: Thanks for your interest and offer @pearsy <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_pearsy&d=DwMCaQ&c=slrrB7dE8n7gBJbeO0g-IQ&r=DP3POD-Bz5Q3NHpPPMYmng&m=_dnnj46fVhSqIdmA1EEcxv4KOPUYtAVln3f8cB8DVgM&s=zLEMkeyQttcicGt8N1BMvMBMxkzzlVl_yQUQNMK4HMw&e=> - I recommend scanning the issues labeled with good first issue <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_cytodata_single-2Dcell-2Dclassifier_issues-3Fq-3Dis-253Aopen-2Bis-253Aissue-2Blabel-253A-2522good-2Bfirst-2Bissue-2522&d=DwMCaQ&c=slrrB7dE8n7gBJbeO0g-IQ&r=DP3POD-Bz5Q3NHpPPMYmng&m=_dnnj46fVhSqIdmA1EEcxv4KOPUYtAVln3f8cB8DVgM&s=yf0DsAExOOr6NDvZP58U5B3nFZcvTnzt4i7-Cz5BzmA&e=> and see where you'd like to contribute. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_cytodata_single-2Dcell-2Dclassifier_issues_4-3Femail-5Fsource-3Dnotifications-26email-5Ftoken-3DANT7UDE5WVNC2VBC4AJAQP3QX5XHLA5CNFSM4JIVMPD2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEGOZK7Q-23issuecomment-2D563975550&d=DwMCaQ&c=slrrB7dE8n7gBJbeO0g-IQ&r=DP3POD-Bz5Q3NHpPPMYmng&m=_dnnj46fVhSqIdmA1EEcxv4KOPUYtAVln3f8cB8DVgM&s=ymT-APYMFt4mIfgStl9svpELyf9Y1RmgWIIiXgUfEns&e=>, or unsubscribe <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_notifications_unsubscribe-2Dauth_ANT7UDELMGVQBDYA3GCNKGDQX5XHLANCNFSM4JIVMPDQ&d=DwMCaQ&c=slrrB7dE8n7gBJbeO0g-IQ&r=DP3POD-Bz5Q3NHpPPMYmng&m=_dnnj46fVhSqIdmA1EEcxv4KOPUYtAVln3f8cB8DVgM&s=2G6tOnxr4Y25jQ-ZADn4HJxaEuEWLLpQZVtcwAQYJlA&e=> .