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DESCRIPTION
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DESCRIPTION
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Encoding: UTF-8
Type: Package
Package: pecotmr
Version: 0.1.74
Date: 2024-10-15
Title: Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
Description: The majority of the statistical models in pecotmr are based on fine-mapped single effects described in Wang G et al (2020) JRSS-B. It also incorporates wrappers to a series of useful TWAS methods as well as utility functions for QTL and GWAS integration.
URL: https://github.com/cumc/pecotmr
BugReports: https://github.com/cumc/pecotmr/issues
Authors@R: c(person("Gao Wang",role = c("cre","aut"),
email = "[email protected]"),
person("Daniel Nachun", role = "aut",
email = "[email protected]"))
License: MIT + file LICENSE
Imports:
GBJ,
IRanges,
R.utils,
R6,
Rcpp,
Rfast,
S4Vectors,
bigsnpr,
bigstatsr,
coloc,
data.table,
doFuture,
dplyr,
fsusieR,
furrr,
future,
glmnet,
harmonicmeanp,
magrittr,
mashr,
matrixStats,
mr.ash.alpha,
mr.mash.alpha,
mvsusieR,
pgenlibr,
purrr,
qgg,
quantreg,
qvalue,
readr,
rlang,
snpStats,
stringr,
susieR,
tibble,
tidyr,
udr,
vctrs
Suggests:
knitr,
rmarkdown,
testthat
LinkingTo:
Rcpp,
RcppArmadillo,
RcppGSL
NeedsCompilation: yes
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Remotes:
stephenslab/fsusieR,
stephenslab/mr.ash.alpha,
stephenslab/mr.mash.alpha,
stephenslab/mvsusieR,
stephenslab/udr