conda_build.yml

name: Build conda package

on:
  workflow_dispatch:
    inputs:
      version:
        description: Version to package
        required: true
      build:
        description: "Build revision of package (default: 0)"
        required: false
        default: '0'

jobs:
  build_package_linux-64:
    name: Build conda package for linux-64
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
    env:
      ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_API_TOKEN }}

    steps:
      - name: Checkout pull request branch
        uses: actions/checkout@v3
        with:
          fetch-depth: 0

      - name: Create recipe from template
        run: |
          mkdir /tmp/recipe
          cp .github/recipe/meta.yaml /tmp/recipe/meta.yaml
          cp .github/recipe/build.sh /tmp/recipe/build.sh
          version=${{ github.event.inputs.version }}
          build=${{ github.event.inputs.build }}
          wget https://github.com/cumc/pecotmr/archive/${version}.tar.gz
          sha256sum=$(sha256sum ${version}.tar.gz | cut -d ' ' -f 1)
          sed -i "s/VERSION_PLACEHOLDER/${version}/g" /tmp/recipe/meta.yaml
          sed -i "s/SHA256SUM_PLACEHOLDER/${sha256sum}/g" /tmp/recipe/meta.yaml
          sed -i "s/BUILD_PLACEHOLDER/${build}/g" /tmp/recipe/meta.yaml

      - name: Setup up docker buildx
        uses: docker/setup-buildx-action@v2

      - name: Build and export docker containers
        uses: docker/build-push-action@v4
        with:
          load: true
          file: .github/mambaforge_container.df
          tags: conda_mambabuild:latest

      - name: Build conda packages
        run: docker run --rm --volume /tmp:/tmp --volume $(pwd) --workdir $(pwd) conda_mambabuild conda mambabuild --output-folder /tmp/conda-bld /tmp/recipe

      - name: Setup micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-name: anaconda-client
          create-args: anaconda-client
          generate-run-shell: true

      - name: Upload packages
        shell: micromamba-shell {0}
        run: anaconda upload --force /tmp/conda-bld/linux-64/*.tar.bz2

  build_package_osx-64:
    name: Build conda package for osx-64
    runs-on: macos-13
    strategy:
      fail-fast: false
    env:
      ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_API_TOKEN }}

    steps:
      - name: Checkout pull request branch
        uses: actions/checkout@v3
        with:
          fetch-depth: 0

      - name: Setup micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-name: boa
          create-args: boa conda-verify anaconda-client sed coreutils
          generate-run-shell: true
          condarc: |
            channels:
              - dnachun
              - conda-forge
              - bioconda

      - name: Create recipe from template
        shell: micromamba-shell {0}
        run: |
          mkdir /tmp/recipe
          cp .github/recipe/meta.yaml /tmp/recipe/meta.yaml
          cp .github/recipe/build.sh /tmp/recipe/build.sh
          version=${{ github.event.inputs.version }}
          build=${{ github.event.inputs.build }}
          wget https://github.com/cumc/pecotmr/archive/${version}.tar.gz
          sha256sum=$(sha256sum ${version}.tar.gz | cut -d ' ' -f 1)
          sed -i "s/VERSION_PLACEHOLDER/${version}/g" /tmp/recipe/meta.yaml
          sed -i "s/SHA256SUM_PLACEHOLDER/${sha256sum}/g" /tmp/recipe/meta.yaml
          sed -i "s/BUILD_PLACEHOLDER/${build}/g" /tmp/recipe/meta.yaml

      - name: Build conda package
        shell: micromamba-shell {0}
        run: conda mambabuild --output-folder /tmp/conda-bld /tmp/recipe

      - name: Upload package
        shell: micromamba-shell {0}
        run: anaconda upload --force /tmp/conda-bld/osx-64/*.tar.bz2

  build_package_osx-arm64:
    name: Build conda package for osx-arm64
    runs-on: macos-14
    strategy:
      fail-fast: false
    env:
      ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_API_TOKEN }}

    steps:
      - name: Checkout pull request branch
        uses: actions/checkout@v3
        with:
          fetch-depth: 0

      - name: Setup micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-name: boa
          create-args: boa conda-verify anaconda-client sed coreutils
          generate-run-shell: true
          condarc: |
            channels:
              - dnachun
              - conda-forge
              - bioconda

      - name: Create recipe from template
        shell: micromamba-shell {0}
        run: |
          mkdir /tmp/recipe
          cp .github/recipe/meta.yaml /tmp/recipe/meta.yaml
          cp .github/recipe/build.sh /tmp/recipe/build.sh
          version=${{ github.event.inputs.version }}
          build=${{ github.event.inputs.build }}
          wget https://github.com/cumc/pecotmr/archive/${version}.tar.gz
          sha256sum=$(sha256sum ${version}.tar.gz | cut -d ' ' -f 1)
          sed -i "s/VERSION_PLACEHOLDER/${version}/g" /tmp/recipe/meta.yaml
          sed -i "s/SHA256SUM_PLACEHOLDER/${sha256sum}/g" /tmp/recipe/meta.yaml
          sed -i "s/BUILD_PLACEHOLDER/${build}/g" /tmp/recipe/meta.yaml

      - name: Build conda package
        shell: micromamba-shell {0}
        run: conda mambabuild --output-folder /tmp/conda-bld /tmp/recipe

      - name: Upload package
        shell: micromamba-shell {0}
        run: anaconda upload --force /tmp/conda-bld/osx-arm64/*.tar.bz2