From 496c5c4138d4a67c904e0f0b1fd56951ac7155a2 Mon Sep 17 00:00:00 2001 From: chenxibjmu <77444305+chenxi199506@users.noreply.github.com> Date: Sun, 7 Jul 2024 16:42:17 +0800 Subject: [PATCH] new12 --- tutorial/01TutorialFibroblast.html | 824 ++++++++++++++++++++++++++++- 1 file changed, 821 insertions(+), 3 deletions(-) diff --git a/tutorial/01TutorialFibroblast.html b/tutorial/01TutorialFibroblast.html index 8c2d9c2..57d0e95 100644 --- a/tutorial/01TutorialFibroblast.html +++ b/tutorial/01TutorialFibroblast.html @@ -1758,7 +1758,7 @@

PCA

Wilcoxon

Wilcoxon rank sum test and plot

cwas_classic_comparision(sparkle.data)
-

+

Hausman_test

@@ -1886,14 +1886,832 @@

Cell-phenotype moderation analysis

Moderation network plot

-
sparkle.data <-   cwas.test.data <-  cwas_build_model_data(inputdata = Fibroblast.data,
+
sparkle.data <-   cwas_build_model_data(inputdata = Fibroblast.data,
                                            Sample = "Sample", Phenotype = "Phenotype",
                                            Celltype = "Celltype",Group = "Group",Subgroup = "Subgroup",
                                            Control_label="Control",
                                            Disease_label="Disease"
                                            )

 
SPARKLE::Cell_phenotype_network_plot(sparkle.data)

-

+
## [1] "285 Sample were enronlled in the model"
+## [1] "group1 PIF fitting models have been calculated successful"
+## [1] "group2 PIF fitting models have been calculated successful"
+## [1] "group3 PIF fitting models have been calculated successful"
+## [1] "group4 PIF fitting models have been calculated successful"
+## [1] "24PIF fitting models have been calculated successful"
+## [1] 1
+## [1] "288 Sample were enronlled in the model"
+## [1] "group1 MYO_F fitting models have been calculated successful"
+## [1] "group2 MYO_F fitting models have been calculated successful"
+## [1] "group3 MYO_F fitting models have been calculated successful"
+## [1] "group4 MYO_F fitting models have been calculated successful"
+## [1] "24MYO_F fitting models have been calculated successful"
+## [1] 2
+## [1] "93 Sample were enronlled in the model"
+## [1] "group1 FTF1 fitting models have been calculated successful"
+## [1] "group2 FTF1 fitting models have been calculated successful"
+## [1] "group3 FTF1 fitting models have been calculated successful"
+## [1] "group4 FTF1 fitting models have been calculated successful"
+## [1] "20FTF1 fitting models have been calculated successful"
+## [1] 3
+## [1] "140 Sample were enronlled in the model"
+## [1] "group1 FTF2 fitting models have been calculated successful"
+## [1] "group2 FTF2 fitting models have been calculated successful"
+## [1] "group3 FTF2 fitting models have been calculated successful"
+## [1] "group4 FTF2 fitting models have been calculated successful"
+## [1] "23FTF2 fitting models have been calculated successful"
+## [1] 4
+## [1] "220 Sample were enronlled in the model"
+## [1] "group1 APF2 fitting models have been calculated successful"
+## [1] "group2 APF2 fitting models have been calculated successful"
+## [1] "group3 APF2 fitting models have been calculated successful"
+## [1] "group4 APF2 fitting models have been calculated successful"
+## [1] "20APF2 fitting models have been calculated successful"
+## [1] 5
+## [1] "179 Sample were enronlled in the model"
+## [1] "group1 EMT_F fitting models have been calculated successful"
+## [1] "group2 EMT_F fitting models have been calculated successful"
+## [1] "group3 EMT_F fitting models have been calculated successful"
+## [1] "group4 EMT_F fitting models have been calculated successful"
+## [1] "24EMT_F fitting models have been calculated successful"
+## [1] 6
+## [1] "190 Sample were enronlled in the model"
+## [1] "group1 MTF fitting models have been calculated successful"
+## [1] "group2 MTF fitting models have been calculated successful"
+## [1] "group3 MTF fitting models have been calculated successful"
+## [1] "group4 MTF fitting models have been calculated successful"
+## [1] "22MTF fitting models have been calculated successful"
+## [1] 7
+## [1] "149 Sample were enronlled in the model"
+## [1] "group1 APF1 fitting models have been calculated successful"
+## [1] "group2 APF1 fitting models have been calculated successful"
+## [1] "group3 APF1 fitting models have been calculated successful"
+## [1] "group4 APF1 fitting models have been calculated successful"
+## [1] "22APF1 fitting models have been calculated successful"
+## [1] 8
+## [1] "31 Sample were enronlled in the model"
+## [1] "group1 MSC_F fitting models have been calculated successful"
+## [1] "group2 MSC_F fitting models have been calculated successful"
+## [1] "group3 MSC_F fitting models have been calculated successful"
+## [1] "group4 MSC_F fitting models have been calculated successful"
+## [1] "24MSC_F fitting models have been calculated successful"
+## [1] 9
+## [1] "All models Selection"
+## significant model selected
+## [1] 1
+## significant model selected
+## [1] 2
+## significant model selected
+## [1] 3
+## no significant model
+## [1] 4
+## no significant model
+## [1] 5
+## no significant model
+## [1] 6
+## significant model selected
+## [1] 7
+## significant model selected
+## [1] 8
+## no significant model
+## [1] 9
+## [1] "Warning Message: No Adjusted p value in this data"

+

+
## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF1 APF2 interactionfitting models have been calculated successful"
+## [1] "group2 APF1 APF2 interactionfitting models have been calculated successful"
+## [1] "group3 APF1 APF2 interactionfitting models have been calculated successful"
+## [1] "group4 APF1 APF2 interactionfitting models have been calculated successful"
+## [1] "24APF1 APF2 interactionfitting models have been calculated successful"
+## [1] 1
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF1 EMT_F interactionfitting models have been calculated successful"
+## [1] "group2 APF1 EMT_F interactionfitting models have been calculated successful"
+## [1] "group3 APF1 EMT_F interactionfitting models have been calculated successful"
+## [1] "group4 APF1 EMT_F interactionfitting models have been calculated successful"
+## [1] "24APF1 EMT_F interactionfitting models have been calculated successful"
+## [1] 2
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF1 FTF1 interactionfitting models have been calculated successful"
+## [1] "group2 APF1 FTF1 interactionfitting models have been calculated successful"
+## [1] "group3 APF1 FTF1 interactionfitting models have been calculated successful"
+## [1] "group4 APF1 FTF1 interactionfitting models have been calculated successful"
+## [1] "24APF1 FTF1 interactionfitting models have been calculated successful"
+## [1] 3
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF1 FTF2 interactionfitting models have been calculated successful"
+## [1] "group2 APF1 FTF2 interactionfitting models have been calculated successful"
+## [1] "group3 APF1 FTF2 interactionfitting models have been calculated successful"
+## [1] "group4 APF1 FTF2 interactionfitting models have been calculated successful"
+## [1] "24APF1 FTF2 interactionfitting models have been calculated successful"
+## [1] 4
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF1 MSC_F interactionfitting models have been calculated successful"
+## [1] "group2 APF1 MSC_F interactionfitting models have been calculated successful"
+## [1] "group3 APF1 MSC_F interactionfitting models have been calculated successful"
+## [1] "group4 APF1 MSC_F interactionfitting models have been calculated successful"
+## [1] "24APF1 MSC_F interactionfitting models have been calculated successful"
+## [1] 5
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF1 MTF interactionfitting models have been calculated successful"
+## [1] "group2 APF1 MTF interactionfitting models have been calculated successful"
+## [1] "group3 APF1 MTF interactionfitting models have been calculated successful"
+## [1] "group4 APF1 MTF interactionfitting models have been calculated successful"
+## [1] "24APF1 MTF interactionfitting models have been calculated successful"
+## [1] 6
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF1 MYO_F interactionfitting models have been calculated successful"
+## [1] "group2 APF1 MYO_F interactionfitting models have been calculated successful"
+## [1] "group3 APF1 MYO_F interactionfitting models have been calculated successful"
+## [1] "group4 APF1 MYO_F interactionfitting models have been calculated successful"
+## [1] "24APF1 MYO_F interactionfitting models have been calculated successful"
+## [1] 7
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF1 PIF interactionfitting models have been calculated successful"
+## [1] "group2 APF1 PIF interactionfitting models have been calculated successful"
+## [1] "group3 APF1 PIF interactionfitting models have been calculated successful"
+## [1] "group4 APF1 PIF interactionfitting models have been calculated successful"
+## [1] "24APF1 PIF interactionfitting models have been calculated successful"
+## [1] 8
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF2 APF1 interactionfitting models have been calculated successful"
+## [1] "group2 APF2 APF1 interactionfitting models have been calculated successful"
+## [1] "group3 APF2 APF1 interactionfitting models have been calculated successful"
+## [1] "group4 APF2 APF1 interactionfitting models have been calculated successful"
+## [1] "24APF2 APF1 interactionfitting models have been calculated successful"
+## [1] 9
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF2 EMT_F interactionfitting models have been calculated successful"
+## [1] "group2 APF2 EMT_F interactionfitting models have been calculated successful"
+## [1] "group3 APF2 EMT_F interactionfitting models have been calculated successful"
+## [1] "group4 APF2 EMT_F interactionfitting models have been calculated successful"
+## [1] "24APF2 EMT_F interactionfitting models have been calculated successful"
+## [1] 10
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF2 FTF1 interactionfitting models have been calculated successful"
+## [1] "group2 APF2 FTF1 interactionfitting models have been calculated successful"
+## [1] "group3 APF2 FTF1 interactionfitting models have been calculated successful"
+## [1] "group4 APF2 FTF1 interactionfitting models have been calculated successful"
+## [1] "24APF2 FTF1 interactionfitting models have been calculated successful"
+## [1] 11
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF2 FTF2 interactionfitting models have been calculated successful"
+## [1] "group2 APF2 FTF2 interactionfitting models have been calculated successful"
+## [1] "group3 APF2 FTF2 interactionfitting models have been calculated successful"
+## [1] "group4 APF2 FTF2 interactionfitting models have been calculated successful"
+## [1] "24APF2 FTF2 interactionfitting models have been calculated successful"
+## [1] 12
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF2 MSC_F interactionfitting models have been calculated successful"
+## [1] "group2 APF2 MSC_F interactionfitting models have been calculated successful"
+## [1] "group3 APF2 MSC_F interactionfitting models have been calculated successful"
+## [1] "group4 APF2 MSC_F interactionfitting models have been calculated successful"
+## [1] "24APF2 MSC_F interactionfitting models have been calculated successful"
+## [1] 13
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF2 MTF interactionfitting models have been calculated successful"
+## [1] "group2 APF2 MTF interactionfitting models have been calculated successful"
+## [1] "group3 APF2 MTF interactionfitting models have been calculated successful"
+## [1] "group4 APF2 MTF interactionfitting models have been calculated successful"
+## [1] "24APF2 MTF interactionfitting models have been calculated successful"
+## [1] 14
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF2 MYO_F interactionfitting models have been calculated successful"
+## [1] "group2 APF2 MYO_F interactionfitting models have been calculated successful"
+## [1] "group3 APF2 MYO_F interactionfitting models have been calculated successful"
+## [1] "group4 APF2 MYO_F interactionfitting models have been calculated successful"
+## [1] "24APF2 MYO_F interactionfitting models have been calculated successful"
+## [1] 15
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 APF2 PIF interactionfitting models have been calculated successful"
+## [1] "group2 APF2 PIF interactionfitting models have been calculated successful"
+## [1] "group3 APF2 PIF interactionfitting models have been calculated successful"
+## [1] "group4 APF2 PIF interactionfitting models have been calculated successful"
+## [1] "24APF2 PIF interactionfitting models have been calculated successful"
+## [1] 16
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 EMT_F APF1 interactionfitting models have been calculated successful"
+## [1] "group2 EMT_F APF1 interactionfitting models have been calculated successful"
+## [1] "group3 EMT_F APF1 interactionfitting models have been calculated successful"
+## [1] "group4 EMT_F APF1 interactionfitting models have been calculated successful"
+## [1] "24EMT_F APF1 interactionfitting models have been calculated successful"
+## [1] 17
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 EMT_F APF2 interactionfitting models have been calculated successful"
+## [1] "group2 EMT_F APF2 interactionfitting models have been calculated successful"
+## [1] "group3 EMT_F APF2 interactionfitting models have been calculated successful"
+## [1] "group4 EMT_F APF2 interactionfitting models have been calculated successful"
+## [1] "24EMT_F APF2 interactionfitting models have been calculated successful"
+## [1] 18
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 EMT_F FTF1 interactionfitting models have been calculated successful"
+## [1] "group2 EMT_F FTF1 interactionfitting models have been calculated successful"
+## [1] "group3 EMT_F FTF1 interactionfitting models have been calculated successful"
+## [1] "group4 EMT_F FTF1 interactionfitting models have been calculated successful"
+## [1] "24EMT_F FTF1 interactionfitting models have been calculated successful"
+## [1] 19
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 EMT_F FTF2 interactionfitting models have been calculated successful"
+## [1] "group2 EMT_F FTF2 interactionfitting models have been calculated successful"
+## [1] "group3 EMT_F FTF2 interactionfitting models have been calculated successful"
+## [1] "group4 EMT_F FTF2 interactionfitting models have been calculated successful"
+## [1] "24EMT_F FTF2 interactionfitting models have been calculated successful"
+## [1] 20
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 EMT_F MSC_F interactionfitting models have been calculated successful"
+## [1] "group2 EMT_F MSC_F interactionfitting models have been calculated successful"
+## [1] "group3 EMT_F MSC_F interactionfitting models have been calculated successful"
+## [1] "group4 EMT_F MSC_F interactionfitting models have been calculated successful"
+## [1] "24EMT_F MSC_F interactionfitting models have been calculated successful"
+## [1] 21
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 EMT_F MTF interactionfitting models have been calculated successful"
+## [1] "group2 EMT_F MTF interactionfitting models have been calculated successful"
+## [1] "group3 EMT_F MTF interactionfitting models have been calculated successful"
+## [1] "group4 EMT_F MTF interactionfitting models have been calculated successful"
+## [1] "24EMT_F MTF interactionfitting models have been calculated successful"
+## [1] 22
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 EMT_F MYO_F interactionfitting models have been calculated successful"
+## [1] "group2 EMT_F MYO_F interactionfitting models have been calculated successful"
+## [1] "group3 EMT_F MYO_F interactionfitting models have been calculated successful"
+## [1] "group4 EMT_F MYO_F interactionfitting models have been calculated successful"
+## [1] "24EMT_F MYO_F interactionfitting models have been calculated successful"
+## [1] 23
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 EMT_F PIF interactionfitting models have been calculated successful"
+## [1] "group2 EMT_F PIF interactionfitting models have been calculated successful"
+## [1] "group3 EMT_F PIF interactionfitting models have been calculated successful"
+## [1] "group4 EMT_F PIF interactionfitting models have been calculated successful"
+## [1] "24EMT_F PIF interactionfitting models have been calculated successful"
+## [1] 24
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF1 APF1 interactionfitting models have been calculated successful"
+## [1] "group2 FTF1 APF1 interactionfitting models have been calculated successful"
+## [1] "group3 FTF1 APF1 interactionfitting models have been calculated successful"
+## [1] "group4 FTF1 APF1 interactionfitting models have been calculated successful"
+## [1] "24FTF1 APF1 interactionfitting models have been calculated successful"
+## [1] 25
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF1 APF2 interactionfitting models have been calculated successful"
+## [1] "group2 FTF1 APF2 interactionfitting models have been calculated successful"
+## [1] "group3 FTF1 APF2 interactionfitting models have been calculated successful"
+## [1] "group4 FTF1 APF2 interactionfitting models have been calculated successful"
+## [1] "24FTF1 APF2 interactionfitting models have been calculated successful"
+## [1] 26
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF1 EMT_F interactionfitting models have been calculated successful"
+## [1] "group2 FTF1 EMT_F interactionfitting models have been calculated successful"
+## [1] "group3 FTF1 EMT_F interactionfitting models have been calculated successful"
+## [1] "group4 FTF1 EMT_F interactionfitting models have been calculated successful"
+## [1] "24FTF1 EMT_F interactionfitting models have been calculated successful"
+## [1] 27
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF1 FTF2 interactionfitting models have been calculated successful"
+## [1] "group2 FTF1 FTF2 interactionfitting models have been calculated successful"
+## [1] "group3 FTF1 FTF2 interactionfitting models have been calculated successful"
+## [1] "group4 FTF1 FTF2 interactionfitting models have been calculated successful"
+## [1] "24FTF1 FTF2 interactionfitting models have been calculated successful"
+## [1] 28
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF1 MSC_F interactionfitting models have been calculated successful"
+## [1] "group2 FTF1 MSC_F interactionfitting models have been calculated successful"
+## [1] "group3 FTF1 MSC_F interactionfitting models have been calculated successful"
+## [1] "group4 FTF1 MSC_F interactionfitting models have been calculated successful"
+## [1] "24FTF1 MSC_F interactionfitting models have been calculated successful"
+## [1] 29
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF1 MTF interactionfitting models have been calculated successful"
+## [1] "group2 FTF1 MTF interactionfitting models have been calculated successful"
+## [1] "group3 FTF1 MTF interactionfitting models have been calculated successful"
+## [1] "group4 FTF1 MTF interactionfitting models have been calculated successful"
+## [1] "24FTF1 MTF interactionfitting models have been calculated successful"
+## [1] 30
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF1 MYO_F interactionfitting models have been calculated successful"
+## [1] "group2 FTF1 MYO_F interactionfitting models have been calculated successful"
+## [1] "group3 FTF1 MYO_F interactionfitting models have been calculated successful"
+## [1] "group4 FTF1 MYO_F interactionfitting models have been calculated successful"
+## [1] "24FTF1 MYO_F interactionfitting models have been calculated successful"
+## [1] 31
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF1 PIF interactionfitting models have been calculated successful"
+## [1] "group2 FTF1 PIF interactionfitting models have been calculated successful"
+## [1] "group3 FTF1 PIF interactionfitting models have been calculated successful"
+## [1] "group4 FTF1 PIF interactionfitting models have been calculated successful"
+## [1] "24FTF1 PIF interactionfitting models have been calculated successful"
+## [1] 32
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF2 APF1 interactionfitting models have been calculated successful"
+## [1] "group2 FTF2 APF1 interactionfitting models have been calculated successful"
+## [1] "group3 FTF2 APF1 interactionfitting models have been calculated successful"
+## [1] "group4 FTF2 APF1 interactionfitting models have been calculated successful"
+## [1] "24FTF2 APF1 interactionfitting models have been calculated successful"
+## [1] 33
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF2 APF2 interactionfitting models have been calculated successful"
+## [1] "group2 FTF2 APF2 interactionfitting models have been calculated successful"
+## [1] "group3 FTF2 APF2 interactionfitting models have been calculated successful"
+## [1] "group4 FTF2 APF2 interactionfitting models have been calculated successful"
+## [1] "24FTF2 APF2 interactionfitting models have been calculated successful"
+## [1] 34
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF2 EMT_F interactionfitting models have been calculated successful"
+## [1] "group2 FTF2 EMT_F interactionfitting models have been calculated successful"
+## [1] "group3 FTF2 EMT_F interactionfitting models have been calculated successful"
+## [1] "group4 FTF2 EMT_F interactionfitting models have been calculated successful"
+## [1] "24FTF2 EMT_F interactionfitting models have been calculated successful"
+## [1] 35
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF2 FTF1 interactionfitting models have been calculated successful"
+## [1] "group2 FTF2 FTF1 interactionfitting models have been calculated successful"
+## [1] "group3 FTF2 FTF1 interactionfitting models have been calculated successful"
+## [1] "group4 FTF2 FTF1 interactionfitting models have been calculated successful"
+## [1] "24FTF2 FTF1 interactionfitting models have been calculated successful"
+## [1] 36
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF2 MSC_F interactionfitting models have been calculated successful"
+## [1] "group2 FTF2 MSC_F interactionfitting models have been calculated successful"
+## [1] "group3 FTF2 MSC_F interactionfitting models have been calculated successful"
+## [1] "group4 FTF2 MSC_F interactionfitting models have been calculated successful"
+## [1] "24FTF2 MSC_F interactionfitting models have been calculated successful"
+## [1] 37
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF2 MTF interactionfitting models have been calculated successful"
+## [1] "group2 FTF2 MTF interactionfitting models have been calculated successful"
+## [1] "group3 FTF2 MTF interactionfitting models have been calculated successful"
+## [1] "group4 FTF2 MTF interactionfitting models have been calculated successful"
+## [1] "24FTF2 MTF interactionfitting models have been calculated successful"
+## [1] 38
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF2 MYO_F interactionfitting models have been calculated successful"
+## [1] "group2 FTF2 MYO_F interactionfitting models have been calculated successful"
+## [1] "group3 FTF2 MYO_F interactionfitting models have been calculated successful"
+## [1] "group4 FTF2 MYO_F interactionfitting models have been calculated successful"
+## [1] "24FTF2 MYO_F interactionfitting models have been calculated successful"
+## [1] 39
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 FTF2 PIF interactionfitting models have been calculated successful"
+## [1] "group2 FTF2 PIF interactionfitting models have been calculated successful"
+## [1] "group3 FTF2 PIF interactionfitting models have been calculated successful"
+## [1] "group4 FTF2 PIF interactionfitting models have been calculated successful"
+## [1] "24FTF2 PIF interactionfitting models have been calculated successful"
+## [1] 40
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MSC_F APF1 interactionfitting models have been calculated successful"
+## [1] "group2 MSC_F APF1 interactionfitting models have been calculated successful"
+## [1] "group3 MSC_F APF1 interactionfitting models have been calculated successful"
+## [1] "group4 MSC_F APF1 interactionfitting models have been calculated successful"
+## [1] "24MSC_F APF1 interactionfitting models have been calculated successful"
+## [1] 41
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MSC_F APF2 interactionfitting models have been calculated successful"
+## [1] "group2 MSC_F APF2 interactionfitting models have been calculated successful"
+## [1] "group3 MSC_F APF2 interactionfitting models have been calculated successful"
+## [1] "group4 MSC_F APF2 interactionfitting models have been calculated successful"
+## [1] "24MSC_F APF2 interactionfitting models have been calculated successful"
+## [1] 42
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MSC_F EMT_F interactionfitting models have been calculated successful"
+## [1] "group2 MSC_F EMT_F interactionfitting models have been calculated successful"
+## [1] "group3 MSC_F EMT_F interactionfitting models have been calculated successful"
+## [1] "group4 MSC_F EMT_F interactionfitting models have been calculated successful"
+## [1] "24MSC_F EMT_F interactionfitting models have been calculated successful"
+## [1] 43
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MSC_F FTF1 interactionfitting models have been calculated successful"
+## [1] "group2 MSC_F FTF1 interactionfitting models have been calculated successful"
+## [1] "group3 MSC_F FTF1 interactionfitting models have been calculated successful"
+## [1] "group4 MSC_F FTF1 interactionfitting models have been calculated successful"
+## [1] "24MSC_F FTF1 interactionfitting models have been calculated successful"
+## [1] 44
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MSC_F FTF2 interactionfitting models have been calculated successful"
+## [1] "group2 MSC_F FTF2 interactionfitting models have been calculated successful"
+## [1] "group3 MSC_F FTF2 interactionfitting models have been calculated successful"
+## [1] "group4 MSC_F FTF2 interactionfitting models have been calculated successful"
+## [1] "24MSC_F FTF2 interactionfitting models have been calculated successful"
+## [1] 45
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MSC_F MTF interactionfitting models have been calculated successful"
+## [1] "group2 MSC_F MTF interactionfitting models have been calculated successful"
+## [1] "group3 MSC_F MTF interactionfitting models have been calculated successful"
+## [1] "group4 MSC_F MTF interactionfitting models have been calculated successful"
+## [1] "24MSC_F MTF interactionfitting models have been calculated successful"
+## [1] 46
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MSC_F MYO_F interactionfitting models have been calculated successful"
+## [1] "group2 MSC_F MYO_F interactionfitting models have been calculated successful"
+## [1] "group3 MSC_F MYO_F interactionfitting models have been calculated successful"
+## [1] "group4 MSC_F MYO_F interactionfitting models have been calculated successful"
+## [1] "24MSC_F MYO_F interactionfitting models have been calculated successful"
+## [1] 47
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MSC_F PIF interactionfitting models have been calculated successful"
+## [1] "group2 MSC_F PIF interactionfitting models have been calculated successful"
+## [1] "group3 MSC_F PIF interactionfitting models have been calculated successful"
+## [1] "group4 MSC_F PIF interactionfitting models have been calculated successful"
+## [1] "24MSC_F PIF interactionfitting models have been calculated successful"
+## [1] 48
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MTF APF1 interactionfitting models have been calculated successful"
+## [1] "group2 MTF APF1 interactionfitting models have been calculated successful"
+## [1] "group3 MTF APF1 interactionfitting models have been calculated successful"
+## [1] "group4 MTF APF1 interactionfitting models have been calculated successful"
+## [1] "24MTF APF1 interactionfitting models have been calculated successful"
+## [1] 49
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MTF APF2 interactionfitting models have been calculated successful"
+## [1] "group2 MTF APF2 interactionfitting models have been calculated successful"
+## [1] "group3 MTF APF2 interactionfitting models have been calculated successful"
+## [1] "group4 MTF APF2 interactionfitting models have been calculated successful"
+## [1] "24MTF APF2 interactionfitting models have been calculated successful"
+## [1] 50
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MTF EMT_F interactionfitting models have been calculated successful"
+## [1] "group2 MTF EMT_F interactionfitting models have been calculated successful"
+## [1] "group3 MTF EMT_F interactionfitting models have been calculated successful"
+## [1] "group4 MTF EMT_F interactionfitting models have been calculated successful"
+## [1] "24MTF EMT_F interactionfitting models have been calculated successful"
+## [1] 51
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MTF FTF1 interactionfitting models have been calculated successful"
+## [1] "group2 MTF FTF1 interactionfitting models have been calculated successful"
+## [1] "group3 MTF FTF1 interactionfitting models have been calculated successful"
+## [1] "group4 MTF FTF1 interactionfitting models have been calculated successful"
+## [1] "24MTF FTF1 interactionfitting models have been calculated successful"
+## [1] 52
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MTF FTF2 interactionfitting models have been calculated successful"
+## [1] "group2 MTF FTF2 interactionfitting models have been calculated successful"
+## [1] "group3 MTF FTF2 interactionfitting models have been calculated successful"
+## [1] "group4 MTF FTF2 interactionfitting models have been calculated successful"
+## [1] "24MTF FTF2 interactionfitting models have been calculated successful"
+## [1] 53
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MTF MSC_F interactionfitting models have been calculated successful"
+## [1] "group2 MTF MSC_F interactionfitting models have been calculated successful"
+## [1] "group3 MTF MSC_F interactionfitting models have been calculated successful"
+## [1] "group4 MTF MSC_F interactionfitting models have been calculated successful"
+## [1] "24MTF MSC_F interactionfitting models have been calculated successful"
+## [1] 54
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MTF MYO_F interactionfitting models have been calculated successful"
+## [1] "group2 MTF MYO_F interactionfitting models have been calculated successful"
+## [1] "group3 MTF MYO_F interactionfitting models have been calculated successful"
+## [1] "group4 MTF MYO_F interactionfitting models have been calculated successful"
+## [1] "24MTF MYO_F interactionfitting models have been calculated successful"
+## [1] 55
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MTF PIF interactionfitting models have been calculated successful"
+## [1] "group2 MTF PIF interactionfitting models have been calculated successful"
+## [1] "group3 MTF PIF interactionfitting models have been calculated successful"
+## [1] "group4 MTF PIF interactionfitting models have been calculated successful"
+## [1] "24MTF PIF interactionfitting models have been calculated successful"
+## [1] 56
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MYO_F APF1 interactionfitting models have been calculated successful"
+## [1] "group2 MYO_F APF1 interactionfitting models have been calculated successful"
+## [1] "group3 MYO_F APF1 interactionfitting models have been calculated successful"
+## [1] "group4 MYO_F APF1 interactionfitting models have been calculated successful"
+## [1] "24MYO_F APF1 interactionfitting models have been calculated successful"
+## [1] 57
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MYO_F APF2 interactionfitting models have been calculated successful"
+## [1] "group2 MYO_F APF2 interactionfitting models have been calculated successful"
+## [1] "group3 MYO_F APF2 interactionfitting models have been calculated successful"
+## [1] "group4 MYO_F APF2 interactionfitting models have been calculated successful"
+## [1] "24MYO_F APF2 interactionfitting models have been calculated successful"
+## [1] 58
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MYO_F EMT_F interactionfitting models have been calculated successful"
+## [1] "group2 MYO_F EMT_F interactionfitting models have been calculated successful"
+## [1] "group3 MYO_F EMT_F interactionfitting models have been calculated successful"
+## [1] "group4 MYO_F EMT_F interactionfitting models have been calculated successful"
+## [1] "24MYO_F EMT_F interactionfitting models have been calculated successful"
+## [1] 59
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MYO_F FTF1 interactionfitting models have been calculated successful"
+## [1] "group2 MYO_F FTF1 interactionfitting models have been calculated successful"
+## [1] "group3 MYO_F FTF1 interactionfitting models have been calculated successful"
+## [1] "group4 MYO_F FTF1 interactionfitting models have been calculated successful"
+## [1] "24MYO_F FTF1 interactionfitting models have been calculated successful"
+## [1] 60
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MYO_F FTF2 interactionfitting models have been calculated successful"
+## [1] "group2 MYO_F FTF2 interactionfitting models have been calculated successful"
+## [1] "group3 MYO_F FTF2 interactionfitting models have been calculated successful"
+## [1] "group4 MYO_F FTF2 interactionfitting models have been calculated successful"
+## [1] "24MYO_F FTF2 interactionfitting models have been calculated successful"
+## [1] 61
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MYO_F MSC_F interactionfitting models have been calculated successful"
+## [1] "group2 MYO_F MSC_F interactionfitting models have been calculated successful"
+## [1] "group3 MYO_F MSC_F interactionfitting models have been calculated successful"
+## [1] "group4 MYO_F MSC_F interactionfitting models have been calculated successful"
+## [1] "24MYO_F MSC_F interactionfitting models have been calculated successful"
+## [1] 62
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MYO_F MTF interactionfitting models have been calculated successful"
+## [1] "group2 MYO_F MTF interactionfitting models have been calculated successful"
+## [1] "group3 MYO_F MTF interactionfitting models have been calculated successful"
+## [1] "group4 MYO_F MTF interactionfitting models have been calculated successful"
+## [1] "24MYO_F MTF interactionfitting models have been calculated successful"
+## [1] 63
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 MYO_F PIF interactionfitting models have been calculated successful"
+## [1] "group2 MYO_F PIF interactionfitting models have been calculated successful"
+## [1] "group3 MYO_F PIF interactionfitting models have been calculated successful"
+## [1] "group4 MYO_F PIF interactionfitting models have been calculated successful"
+## [1] "24MYO_F PIF interactionfitting models have been calculated successful"
+## [1] 64
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 PIF APF1 interactionfitting models have been calculated successful"
+## [1] "group2 PIF APF1 interactionfitting models have been calculated successful"
+## [1] "group3 PIF APF1 interactionfitting models have been calculated successful"
+## [1] "group4 PIF APF1 interactionfitting models have been calculated successful"
+## [1] "24PIF APF1 interactionfitting models have been calculated successful"
+## [1] 65
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 PIF APF2 interactionfitting models have been calculated successful"
+## [1] "group2 PIF APF2 interactionfitting models have been calculated successful"
+## [1] "group3 PIF APF2 interactionfitting models have been calculated successful"
+## [1] "group4 PIF APF2 interactionfitting models have been calculated successful"
+## [1] "24PIF APF2 interactionfitting models have been calculated successful"
+## [1] 66
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 PIF EMT_F interactionfitting models have been calculated successful"
+## [1] "group2 PIF EMT_F interactionfitting models have been calculated successful"
+## [1] "group3 PIF EMT_F interactionfitting models have been calculated successful"
+## [1] "group4 PIF EMT_F interactionfitting models have been calculated successful"
+## [1] "24PIF EMT_F interactionfitting models have been calculated successful"
+## [1] 67
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 PIF FTF1 interactionfitting models have been calculated successful"
+## [1] "group2 PIF FTF1 interactionfitting models have been calculated successful"
+## [1] "group3 PIF FTF1 interactionfitting models have been calculated successful"
+## [1] "group4 PIF FTF1 interactionfitting models have been calculated successful"
+## [1] "24PIF FTF1 interactionfitting models have been calculated successful"
+## [1] 68
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 PIF FTF2 interactionfitting models have been calculated successful"
+## [1] "group2 PIF FTF2 interactionfitting models have been calculated successful"
+## [1] "group3 PIF FTF2 interactionfitting models have been calculated successful"
+## [1] "group4 PIF FTF2 interactionfitting models have been calculated successful"
+## [1] "24PIF FTF2 interactionfitting models have been calculated successful"
+## [1] 69
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 PIF MSC_F interactionfitting models have been calculated successful"
+## [1] "group2 PIF MSC_F interactionfitting models have been calculated successful"
+## [1] "group3 PIF MSC_F interactionfitting models have been calculated successful"
+## [1] "group4 PIF MSC_F interactionfitting models have been calculated successful"
+## [1] "24PIF MSC_F interactionfitting models have been calculated successful"
+## [1] 70
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 PIF MTF interactionfitting models have been calculated successful"
+## [1] "group2 PIF MTF interactionfitting models have been calculated successful"
+## [1] "group3 PIF MTF interactionfitting models have been calculated successful"
+## [1] "group4 PIF MTF interactionfitting models have been calculated successful"
+## [1] "24PIF MTF interactionfitting models have been calculated successful"
+## [1] 71
+## [1] "Cell type interaction in all models calculation"
+## [1] "378 Sample were enronlled in the model"
+## [1] "group1 PIF MYO_F interactionfitting models have been calculated successful"
+## [1] "group2 PIF MYO_F interactionfitting models have been calculated successful"
+## [1] "group3 PIF MYO_F interactionfitting models have been calculated successful"
+## [1] "group4 PIF MYO_F interactionfitting models have been calculated successful"
+## [1] "24PIF MYO_F interactionfitting models have been calculated successful"
+## [1] 72
+## [1] "All models Selection"
+## significant model selected
+## [1] 1
+## no significant model
+## [1] 2
+## significant model selected
+## [1] 3
+## no significant model
+## [1] 4
+## no significant model
+## [1] 5
+## no significant model
+## [1] 6
+## no significant model
+## [1] 7
+## significant model selected
+## [1] 8
+## no significant model
+## [1] 9
+## no significant model
+## [1] 10
+## significant model selected
+## [1] 11
+## no significant model
+## [1] 12
+## no significant model
+## [1] 13
+## no significant model
+## [1] 14
+## no significant model
+## [1] 15
+## no significant model
+## [1] 16
+## no significant model
+## [1] 17
+## no significant model
+## [1] 18
+## significant model selected
+## [1] 19
+## no significant model
+## [1] 20
+## no significant model
+## [1] 21
+## significant model selected
+## [1] 22
+## no significant model
+## [1] 23
+## no significant model
+## [1] 24
+## significant model selected
+## [1] 25
+## significant model selected
+## [1] 26
+## significant model selected
+## [1] 27
+## no significant model
+## [1] 28
+## no significant model
+## [1] 29
+## significant model selected
+## [1] 30
+## no significant model
+## [1] 31
+## significant model selected
+## [1] 32
+## no significant model
+## [1] 33
+## no significant model
+## [1] 34
+## no significant model
+## [1] 35
+## no significant model
+## [1] 36
+## no significant model
+## [1] 37
+## no significant model
+## [1] 38
+## no significant model
+## [1] 39
+## no significant model
+## [1] 40
+## no significant model
+## [1] 41
+## no significant model
+## [1] 42
+## no significant model
+## [1] 43
+## no significant model
+## [1] 44
+## no significant model
+## [1] 45
+## no significant model
+## [1] 46
+## no significant model
+## [1] 47
+## no significant model
+## [1] 48
+## no significant model
+## [1] 49
+## significant model selected
+## [1] 50
+## significant model selected
+## [1] 51
+## no significant model
+## [1] 52
+## no significant model
+## [1] 53
+## no significant model
+## [1] 54
+## no significant model
+## [1] 55
+## significant model selected
+## [1] 56
+## no significant model
+## [1] 57
+## no significant model
+## [1] 58
+## no significant model
+## [1] 59
+## significant model selected
+## [1] 60
+## no significant model
+## [1] 61
+## no significant model
+## [1] 62
+## no significant model
+## [1] 63
+## no significant model
+## [1] 64
+## significant model selected
+## [1] 65
+## significant model selected
+## [1] 66
+## no significant model
+## [1] 67
+## significant model selected
+## [1] 68
+## no significant model
+## [1] 69
+## no significant model
+## [1] 70
+## significant model selected
+## [1] 71
+## no significant model
+## [1] 72
+## [1] "Warning Message: No Adjusted p value in this data"

+

+
## IGRAPH ea1a3d5 DNW- 9 72 -- 
+## + attr: name (v/c), color (v/c), size (v/n), shape (v/c), label.cex
+## | (v/n), label.color (v/c), frame.color (v/c), Pvalue (e/n), OR (e/n),
+## | weight (e/n), color (e/c), width (e/n)
+## + edges from ea1a3d5 (vertex names):
+##  [1] APF2 ->APF1  EMT_F->APF1  FTF1 ->APF1  FTF2 ->APF1  MSC_F->APF1 
+##  [6] MTF  ->APF1  MYO_F->APF1  PIF  ->APF1  APF1 ->APF2  EMT_F->APF2 
+## [11] FTF1 ->APF2  FTF2 ->APF2  MSC_F->APF2  MTF  ->APF2  MYO_F->APF2 
+## [16] PIF  ->APF2  APF1 ->EMT_F APF2 ->EMT_F FTF1 ->EMT_F FTF2 ->EMT_F
+## [21] MSC_F->EMT_F MTF  ->EMT_F MYO_F->EMT_F PIF  ->EMT_F APF1 ->FTF1 
+## [26] APF2 ->FTF1  EMT_F->FTF1  FTF2 ->FTF1  MSC_F->FTF1  MTF  ->FTF1 
+## + ... omitted several edges