{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":87789709,"defaultBranch":"master","name":"V-pipe","ownerLogin":"cbg-ethz","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2017-04-10T09:01:20.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/12068026?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1717785812.0","currentOid":""},"activityList":{"items":[{"before":"c895b7dff513c7e5e904b32279acd33c4c9ccad0","after":"b349a5157581fcd6026d45dd2b511eafd7a87e71","ref":"refs/heads/rubicon","pushedAt":"2024-06-07T20:03:58.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Singularity+conda support","shortMessageHtmlLink":"Singularity+conda support"}},{"before":"d840e801a2477922aa7e3382928fff1f67671c3a","after":"c895b7dff513c7e5e904b32279acd33c4c9ccad0","ref":"refs/heads/rubicon","pushedAt":"2024-06-07T19:50:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Singularity+conda support","shortMessageHtmlLink":"Singularity+conda support"}},{"before":"4c80f5f141b06a0939ced6b4945f7db7a6827308","after":"d840e801a2477922aa7e3382928fff1f67671c3a","ref":"refs/heads/master","pushedAt":"2024-06-07T18:47:42.000Z","pushType":"push","commitsCount":92,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Links to bioconda in installation tutorial","shortMessageHtmlLink":"Links to bioconda in installation tutorial"}},{"before":"d840e801a2477922aa7e3382928fff1f67671c3a","after":"fdf00beed51296a168e1276dfd3c1433d04f94d9","ref":"refs/heads/feature-baseconfigify-viruses","pushedAt":"2024-06-07T18:45:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Making virus base config from demo configs\n\n- We did provide demo config files for several viruses\n- Now they can be included with virus-base-config","shortMessageHtmlLink":"Making virus base config from demo configs"}},{"before":null,"after":"d840e801a2477922aa7e3382928fff1f67671c3a","ref":"refs/heads/feature-baseconfigify-viruses","pushedAt":"2024-06-07T18:43:32.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Links to bioconda in installation tutorial","shortMessageHtmlLink":"Links to bioconda in installation tutorial"}},{"before":"9ab7264c7c2a8b1433f5eabf29a53441aaa64675","after":"d840e801a2477922aa7e3382928fff1f67671c3a","ref":"refs/heads/rubicon","pushedAt":"2024-06-07T17:51:30.000Z","pushType":"push","commitsCount":16,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Links to bioconda in installation tutorial","shortMessageHtmlLink":"Links to bioconda in installation tutorial"}},{"before":"92f71481336f2832e8c5cd7f9a547d13d3e0578b","after":"c948d2e315da629719369edbaac8217edfe98269","ref":"refs/heads/add_viloca","pushedAt":"2024-06-07T15:42:45.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Generate copnfig manual","shortMessageHtmlLink":"Generate copnfig manual"}},{"before":"41e0b538db0ae932ef4a83d8a4b8f3799b2df17f","after":"9ab7264c7c2a8b1433f5eabf29a53441aaa64675","ref":"refs/heads/rubicon","pushedAt":"2024-06-07T10:08:51.000Z","pushType":"push","commitsCount":75,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Keep the linter happy","shortMessageHtmlLink":"Keep the linter happy"}},{"before":"ea46be354bdd85fbfb17fefdebeaa04f16d68a82","after":"9ab7264c7c2a8b1433f5eabf29a53441aaa64675","ref":"refs/heads/feature-benchmark","pushedAt":"2024-06-07T09:23:59.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Keep the linter happy","shortMessageHtmlLink":"Keep the linter happy"}},{"before":"54dd6de5fbc5bbeba0358907884ab91ec270ad00","after":"ea46be354bdd85fbfb17fefdebeaa04f16d68a82","ref":"refs/heads/feature-benchmark","pushedAt":"2024-06-07T09:17:22.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Keep the linter happy","shortMessageHtmlLink":"Keep the linter happy"}},{"before":"f1acac3f1485f588f0e0462b5dc0ff2d2599d9e3","after":"92f71481336f2832e8c5cd7f9a547d13d3e0578b","ref":"refs/heads/add_viloca","pushedAt":"2024-06-06T13:38:57.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"add conda package to env","shortMessageHtmlLink":"add conda package to env"}},{"before":"c2a1e75318908c3579443ed65b38a68403670a2c","after":"f1acac3f1485f588f0e0462b5dc0ff2d2599d9e3","ref":"refs/heads/add_viloca","pushedAt":"2024-06-04T16:40:03.000Z","pushType":"push","commitsCount":26,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"merge","shortMessageHtmlLink":"merge"}},{"before":"4c80f5f141b06a0939ced6b4945f7db7a6827308","after":"41e0b538db0ae932ef4a83d8a4b8f3799b2df17f","ref":"refs/heads/rubicon","pushedAt":"2024-06-04T01:12:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Version bump COJAC 0.9.2","shortMessageHtmlLink":"Version bump COJAC 0.9.2"}},{"before":"999276dae6a7435a1ca492d930550b16e97e0296","after":"4c80f5f141b06a0939ced6b4945f7db7a6827308","ref":"refs/heads/master","pushedAt":"2024-05-31T16:51:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"support frameshift_deletions_checks chain\n\n- use bfctools' --chain option instead of mafft","shortMessageHtmlLink":"support frameshift_deletions_checks chain"}},{"before":"999276dae6a7435a1ca492d930550b16e97e0296","after":"4c80f5f141b06a0939ced6b4945f7db7a6827308","ref":"refs/heads/rubicon","pushedAt":"2024-05-31T16:51:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"support frameshift_deletions_checks chain\n\n- use bfctools' --chain option instead of mafft","shortMessageHtmlLink":"support frameshift_deletions_checks chain"}},{"before":null,"after":"4c80f5f141b06a0939ced6b4945f7db7a6827308","ref":"refs/heads/alice","pushedAt":"2024-05-31T16:02:59.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"support frameshift_deletions_checks chain\n\n- use bfctools' --chain option instead of mafft","shortMessageHtmlLink":"support frameshift_deletions_checks chain"}},{"before":"449fb9157b6ed8543ee1d3a569e43aa9bb94c28e","after":null,"ref":"refs/heads/add_virus_configs","pushedAt":"2024-05-29T11:35:29.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"}},{"before":"9bd42ce857658fb5ea4dd68855273a11f12e440b","after":"999276dae6a7435a1ca492d930550b16e97e0296","ref":"refs/heads/master","pushedAt":"2024-05-28T21:10:24.000Z","pushType":"push","commitsCount":16,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Keeping the linter happy: README.md titles","shortMessageHtmlLink":"Keeping the linter happy: README.md titles"}},{"before":"9fac09f0016769e5d136f04276d68da5b4b3ab6a","after":"999276dae6a7435a1ca492d930550b16e97e0296","ref":"refs/heads/rubicon","pushedAt":"2024-05-28T19:49:23.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Keeping the linter happy: README.md titles","shortMessageHtmlLink":"Keeping the linter happy: README.md titles"}},{"before":"9bd42ce857658fb5ea4dd68855273a11f12e440b","after":"9fac09f0016769e5d136f04276d68da5b4b3ab6a","ref":"refs/heads/rubicon","pushedAt":"2024-05-28T19:40:58.000Z","pushType":"push","commitsCount":15,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Additional information\n\n- Makes sure that reviewers who lost their way and ended up stranded in\n the middle of the testing infrastructures find their way out and into\n the tutorials.","shortMessageHtmlLink":"Additional information"}},{"before":"25fd3a9117b763fa0fc71ffbbe064eb6d2ea9db1","after":"9bd42ce857658fb5ea4dd68855273a11f12e440b","ref":"refs/heads/master","pushedAt":"2024-05-28T11:12:08.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Compatibility version bump of dependencies\n\n- some old dependencies don't work anymore\n- ngshmmalign, bwa_QA, initial_vicuna_msa, msa, testbench\n depency mafft: 7.305->7.526\n- while we're at it, version bump smallgenomeutilities 0.4.1","shortMessageHtmlLink":"Compatibility version bump of dependencies"}},{"before":"0dda12ee7b49d684e8cd3fba587b92ca68d263ff","after":"9bd42ce857658fb5ea4dd68855273a11f12e440b","ref":"refs/heads/rubicon","pushedAt":"2024-05-28T10:18:00.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Compatibility version bump of dependencies\n\n- some old dependencies don't work anymore\n- ngshmmalign, bwa_QA, initial_vicuna_msa, msa, testbench\n depency mafft: 7.305->7.526\n- while we're at it, version bump smallgenomeutilities 0.4.1","shortMessageHtmlLink":"Compatibility version bump of dependencies"}},{"before":"a9d743d98883025a52df08e6ebab485abd00f0ac","after":"0dda12ee7b49d684e8cd3fba587b92ca68d263ff","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T21:08:36.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Temporary work-around to test a new smgu","shortMessageHtmlLink":"Temporary work-around to test a new smgu"}},{"before":"fc9d7179a02ac504ef60ab3e10eabc56c72a20c9","after":"a9d743d98883025a52df08e6ebab485abd00f0ac","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T20:57:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Temporary work-around to test a new smgu","shortMessageHtmlLink":"Temporary work-around to test a new smgu"}},{"before":"aaa7162ff79752381876e6b4aa04141b134da0ae","after":"fc9d7179a02ac504ef60ab3e10eabc56c72a20c9","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T15:41:20.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Compatibility version bump of dependencies\n\n- some old dependencies don't work anymore\n- ngshmmalign, bwa_QA, initial_vicuna_msa, msa, testbench\n depency mafft: 7.305->7.526\n- while we're at it, version bump smallgenomeutilities 0.4.0","shortMessageHtmlLink":"Compatibility version bump of dependencies"}},{"before":"0938ef11a6d6e8ffa16b2f9c2f4ae32863622ed2","after":"aaa7162ff79752381876e6b4aa04141b134da0ae","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T15:29:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Compatibility version bump of dependencies\n\n- some old dependencies don't work anymore\n- ngshmmalign depency mafft: 7.305->7.526","shortMessageHtmlLink":"Compatibility version bump of dependencies"}},{"before":"1652c89ffdcf8f3a581bb08926949682adf645c2","after":"0938ef11a6d6e8ffa16b2f9c2f4ae32863622ed2","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T15:03:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Modernize conda environment: channels\n\n- Do not rely on 'defaults' anymore but only 'conda-forge' as per\n bioconda recommendations","shortMessageHtmlLink":"Modernize conda environment: channels"}},{"before":"e610d27289d8169d796bc35988a88b30be073c36","after":"1652c89ffdcf8f3a581bb08926949682adf645c2","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T14:44:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Keeping the linter happy","shortMessageHtmlLink":"Keeping the linter happy"}},{"before":"25fd3a9117b763fa0fc71ffbbe064eb6d2ea9db1","after":"e610d27289d8169d796bc35988a88b30be073c36","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T14:33:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Snakemake workflow catalog standardized usage\n\nAdd `.snakemake-workflow-catalog.yml` file for configuring usage instructions for the Snakemake Workflow Catalog","shortMessageHtmlLink":"Snakemake workflow catalog standardized usage"}},{"before":"3eb06bb5b187772e66a7538fe6d8f1a1669459fd","after":"449fb9157b6ed8543ee1d3a569e43aa9bb94c28e","ref":"refs/heads/add_virus_configs","pushedAt":"2024-05-08T13:55:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"add virus config: rsvb","shortMessageHtmlLink":"add virus config: rsvb"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEX49lEQA","startCursor":null,"endCursor":null}},"title":"Activity ยท cbg-ethz/V-pipe"}