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STEP 18 error #672
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Hello, I encountered an error when using Infercnv
My code is :
options("Seurat.object.assay.version" = "v3")
options(scipen = 100)
infercnv_obj = infercnv::run(infercnv_obj,
cutoff=0.1,
out_dir='~/shengjing/result/1/CNV',
cluster_by_groups=FALSE,
analysis_mode="subclusters",
denoise=TRUE,
HMM=TRUE)
INFO [2024-08-07 18:29:08]
My error is :
STEP 18: Run Bayesian Network Model on HMM predicted CNVs
INFO [2024-08-07 18:29:08] Initializing new MCM InferCNV Object.
INFO [2024-08-07 18:29:08] validating infercnv_obj
INFO [2024-08-07 18:29:26] Total CNV's: 169972
INFO [2024-08-07 18:29:26] Loading BUGS Model.
Error in rep(NA, max(unlist(obj@observation_grouped_cell_indices))) :
invalid 'times' argument
In addition: Warning message:
In max(unlist(obj@observation_grouped_cell_indices)) :
no non-missing arguments to max; returning -Inf
My version of infercnv is 1.16.0
I don't know how to deal with this problem, I hope you can help me.
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