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Issues with "infercnv::add_to_seurat" function in infercnv analysis #660

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MinxiaoYang opened this issue Apr 30, 2024 · 0 comments
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@MinxiaoYang
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MinxiaoYang commented Apr 30, 2024

Hi all,

I encountered error as below while I was running "infercnv::add_to_seurat" function. All previous steps ran pretty smoothly and I got all output files which were saved properly. I also double checked the cell names in both of Seurat object and infercnv object, and they matched up well.
I have been struggling with infercnv for 3 weeks. Any thoughts, suggestions, or advice on this matter would be much appreciated!

Code:
AECs_SeuratObj = infercnv::add_to_seurat(infercnv_output_path="inferCNV/AECs", seurat_obj=AECs, # optional, top_n=10)

Error:
WARN [2024-04-30 14:57:52] ::Cell names in Seurat object and infercnv results do not match
Error in infercnv::add_to_seurat(infercnv_output_path = "inferCNV/AECs", :

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