You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi I am runing infercnv and want to visualize using NGCHM, my code is like this:
library(NGCHM)
library(infercnvNGCHM)
infercnv_obj<-readRDS("./cnv/run.final.infercnv_obj")
ngchm(infercnv_obj = infercnv_obj,
out_dir = "./cnv",
path_to_shaidyMapGen = "ShaidyMapGen.jar",
gene_symbol = "bio.gene.hugo")
the output is like
INFO [2024-03-29 20:30:06] Creating NGCHM as infercnv.ngchm
INFO [2024-03-29 20:30:06] Initializing new NGCHM InferCNV Object.
and I got this error
Error in NGCHM::chmNewColorMap(values = as.vector(dendrogram_unique_group), :
chmNewColorMap: number of values (752) does not equal number of color (723). It should.
Calls: ngchm ... setRowCovariateBar -> setRowCovariateBar ->
Execution halted
Could someone help to see what happened? I continuously got this error for different datasets.
The text was updated successfully, but these errors were encountered:
Hi I am runing infercnv and want to visualize using NGCHM, my code is like this:
library(NGCHM)
library(infercnvNGCHM)
infercnv_obj<-readRDS("./cnv/run.final.infercnv_obj")
ngchm(infercnv_obj = infercnv_obj,
out_dir = "./cnv",
path_to_shaidyMapGen = "ShaidyMapGen.jar",
gene_symbol = "bio.gene.hugo")
the output is like
INFO [2024-03-29 20:30:06] Creating NGCHM as infercnv.ngchm
INFO [2024-03-29 20:30:06] Initializing new NGCHM InferCNV Object.
and I got this error
Error in NGCHM::chmNewColorMap(values = as.vector(dendrogram_unique_group), :
chmNewColorMap: number of values (752) does not equal number of color (723). It should.
Calls: ngchm ... setRowCovariateBar -> setRowCovariateBar ->
Execution halted
Could someone help to see what happened? I continuously got this error for different datasets.
The text was updated successfully, but these errors were encountered: