Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

GCP Batch runs fail with malformed docker volume arguments #7408

Open
osha52101 opened this issue Apr 18, 2024 · 1 comment
Open

GCP Batch runs fail with malformed docker volume arguments #7408

osha52101 opened this issue Apr 18, 2024 · 1 comment

Comments

@osha52101
Copy link

Im testing moving LSAPI runs to Batch with v86, and I keep getting the following error:

textPayload: "docker: invalid spec: /mnt/disks/cromwell_root:/mnt/disks/cromwell_root:: empty section between colons."

for this command:
Executing runnable container:{image_uri:"gcr.io/google.com/cloudsdktool/cloud-sdk:434.0.0-alpine" commands:"-c" commands:"printf '%s %s\n' "$(date -u '+%Y/%m/%d %H:%M:%S')" Starting\ container\ setup." entrypoint:"/bin/sh" volumes:"/mnt/disks/cromwell_root:/mnt/disks/cromwell_root:"} timeout:{seconds:300} labels:{key:"logging" value:"ContainerSetup"} for Task task/job-49cc8a88-722b-43067ba4-ab34-48bc00-group0-0/0/0 in TaskGroup group0 of Job job-49cc8a88-722b-43067ba4-ab34-48bc00.

The docker volumes are defined as:
volumes:"/mnt/disks/cromwell_root:/mnt/disks/cromwell_root:"}

Shouldn't there be a rw permissions entry after the last colon? As far as I know, there is no way for users to modify the docker launch config to fix this. Is there something I have malformed or missing in my conf file?

@dspeck1
Copy link
Collaborator

dspeck1 commented May 14, 2024

@osha52101 - please run this with the latest release (87). I believe this issue was resolved.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

3 participants