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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"
[project]
name = "scanvi-explainer"
version = "0.3.1"
description = "Exapliner of scANVI using SHAP"
authors = [
{name = "Martin Proks", email = "[email protected]"},
{name = "Nazmus M Salehin", email = "[email protected]"}
]
readme = "README.md"
license = {file = "LICENSE"}
requires-python = ">=3.10"
keywords = ["shap", "scanvi", "explainer", "interpretability"]
dependencies = [
"anndata",
"pandas<=2.0", # required by scvi-tool for now
"pyarrow",
"rich",
"seaborn",
"scvi-tools",
"shap>=0.41.0",
]
classifiers = [
"Development Status :: 4 - Beta",
"Intended Audience :: Science/Research",
"Topic :: Scientific/Engineering :: Artificial Intelligence",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"License :: OSI Approved :: MIT License",
"Programming Language :: Python :: 3.10"
]
[project.urls]
Homepage = "https://github.com/brickmanlab/scanvi-explainer"
Documentation = "https://scanvi-explainer.readthedocs.io"
Repository = "https://github.com/brickmanlab/scanvi-explainer.git"
Issues = "https://github.com/brickmanlab/scanvi-explainer/issues"
Changelog = "https://github.com/brickmanlab/scanvi-explainer/blob/master/CHANGELOG.md"
[project.optional-dependencies]
dev = [
"huggingface_hub",
"ipykernel",
"ipywidgets",
"ruff"
]
doc = [
"setuptools",
"sphinx>=4.0",
"myst-nb>=1.1",
"sphinx-book-theme>=1",
"sphinxcontrib-bibtex>=1"
]
[tool.ruff.format]
docstring-code-format = true
[tool.mypy]
ignore_missing_imports = true