manuscript.tex

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% \documentclass[twocolumn]{theme/bioRxiv}
\documentclass[submit]{theme/bioRxiv}
\renewcommand\familydefault{\sfdefault}
\usepackage{lipsum}
\usepackage{parskip}

\begin{document}

\leadauthor{Scientist}

\title{Description of an amazing research project}
\shorttitle{Running title here}

\author[1]{First Scientist \orcidlink{0000-0001-0000-0000}}
\author[2]{Second Doctor \orcidlink {000-0002-0000-0000}}
\author[1,\Letter]{Third Professor \orcidlink {000-0003-0000-0000}}
\affil[1]{A University, Academic Street, Learningtown, UK}
\affil[2]{B Institute, Chalk Road, Blackboardville, USA}
\date{}

\maketitle

\begin{abstract}
Abstract of the paper goes here.
\lipsum[1]
\end{abstract}

\begin{keywords}
keyword1 | keyword2 | keyword3
\end{keywords}

\begin{corrauthor}
third.professor\at awesome.ac.uk
\end{corrauthor}

\section*{Introduction}\label{s:introduction}

\lipsum{2-6}

\section*{Results}\label{s:results}

\subsection*{Citations and full size figures with legends underneath}

Text is added like this
This is a reference to a published paper \citep{watson_molecular_1953}.
We can cite other things too \citep{tipton_complexities_2019,zheng_genome_2011,alberts_molecular_2002}

This is a new paragraph.
New sentences on a new line.
New sentences on a new line.

% this is how to add a comment
This is a new result.
% this is how to add a figure with the name cells.
As you can see (Figure \ref{fig:cells}).

% full size figure is figure*
\begin{figure*}
\centering
\includegraphics[width=0.75\linewidth]{figures/temp.png}
\caption{\textbf{These are cells.}\\
(\textbf{A}) This is a regular figure with a legend as a caption underneath. Inset: 3X zoom. Scale bar, \SI{10}{\micro\meter}.}
\label{fig:cells}
\end{figure*}

It is possible to add a one-column Figure like this (Figure \ref{fig:nucleus}).
To add Supplementary Figures you can do either of these things and have them at the end of the end of the paper (Supplementary Figure \ref{suppfig:endosome}).

\lipsum[10]

\subsection*{Subsections are written like this}

\lipsum[11]

% one-column size figure is figure
\begin{figure}
\centering
\includegraphics[width=0.75\linewidth]{figures/temp.png}
\caption{\textbf{This is a nucleus.}\\
(\textbf{A}) This is a one-column figure with a legend as a caption underneath.}
\label{fig:nucleus}
\end{figure}

\lipsum[12]

\subsection*{Another subsection}

\lipsum[13-14]

\subsection*{Another subsection}

\lipsum[13-14]

\subsection*{Another subsection}

\lipsum[13-14]

\section*{Discussion}\label{s:discussion}

This is the discussion section where you wax lyrical about your findings.
You can put your work in the context of other published work \citep{brenner_uga:_1967}.

\lipsum[100-104]

\section*{Methods}\label{s:methods}

\subsection*{Molecular biology}

Details of plasmids are usually first.
Followed by cell biology section.
We have special units defied for molar and for units, e.g. \SI{1}{\Molar} sucrose, \SI{10}{\Units\per\milli\litre}.
Otherwise use siunitx for everything else. \SI{37}{\degreeCelsius} and what-not.

\subsection*{Cell biology}

\lipsum[80]

\acknowledgements{We thank members of the Brickman lab for constructive feedback on the analysis and the manuscript.}\\

\contributions{Contribution information}\\

\interests{We declare no conflict of interest.}\\

\funding{Funding information}\\

\section*{Bibliography}
\bibliography{bibliography.bib}

\include{supplementary.tex}

\end{document}