- build fix for numpy 2.0.0 (#307, #308 thanks @aryarm for fixing build)
- fix OSX ARM wheels (#305, #306 thanks @graphenn for fix)
- support num_records using index stats (#295 from @jeromekelleher)
- don't remove htslib/config.status (#296)
- bump to get new release for CI/wheel fixes. thanks to @graphenn (#286) and @oyvinev (#297)
- fix memory leak in raw_header (#281)
- set samples to empty when given empty list.
- Prevent memory leak if user calls VCF.close() (#280)
- raise exception (instead of segfault) when calling num_called, etc. on variant without genotypes (#262 from @davmlaw)
- fix num_unknown when gts012=True (#236)
- use warnings instead of sys.stderr (#229 from @grahamgower)
- use libdeflate in wheel build (#231 from @grahamgower)
- use pytest instead of nose and update numpy stuff (#232 from @grahamgower)
- fixes for mixed ploidy samples affecting
variant.num_het
,variant.num_hom_ref
, etc. Also affectsvariant.genotypes
andvariant.genotype
(see #227. Thanks @davmlaw and @grahamgower for test-cases and insight.)
- add variant.FILTERS (by @tomwhite, #149)
- bump for CI
- fix is_indel for <NON_REF> (see #217)
- just bumping for CI+wheels
- fix gt_types for phased variants (see: #198)