Cargo.toml

[package]
name = "devider"
version = "0.0.1"
authors = ["jim <jimshawster@gmail.com>"]
edition = "2018"

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[dependencies]
time = "=0.3"
fxhash="0.2"
statrs="0.17"
rayon="1.7"
rand="0.8"
rand_core="0.6"
rust-htslib= { version = "0.44", default-features = false }
clap = { version = "=4.2.0", features = ["derive"] }
block-aligner = { version = "0.4", default-features = false }
debruijn = "0.3"
simple_logger="4"
log="0.4"
itertools = "0.10"
bio = "1.1"
bio-types ="0.13"
rust-lapper = "1.1"
disjoint-sets = "0.4.2"
ordered-float = "2.0"
derivative = "2.2"
fishers_exact = "1.0"

[features]
default = ["sse2"]
avx2 = ["block-aligner/simd_avx2"]
sse2 = ["block-aligner/simd_sse2"]
neon = ["block-aligner/simd_neon"]

[target.'cfg(target_env = "musl")'.dependencies]
tikv-jemallocator = "0"

#[target.'cfg(target_arch = "x86_64")'.dependencies]
#block-aligner = { version = "0.4", features = ["simd_sse2"] }

#[target.'cfg(target_arch = "aarch64")'.dependencies]
#block-aligner = { version = "0.4", features = ["simd_neon"] }

[dev-dependencies]
assert_cmd = "1"
predicates = "1"

[profile.release]
codegen-units = 1
lto = true

[profile.dev]
opt-level = 3

[profile.bench]
debug = true