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index.html
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<!--
/*
*
* xxxxxxx xxxxxxx
* x:::::x x:::::x
* x:::::x x:::::x
* x:::::xx:::::x
* x::::::::::x
* x::::::::x
* x::::::::x
* x::::::::::x
* x:::::xx:::::x
* x:::::x x:::::x
* x:::::x x:::::x
* THE xxxxxxx xxxxxxx TOOLKIT
*
* http://www.goXTK.com
*
* Copyright (c) 2012 The X Toolkit Developers <[email protected]>
*
* The X Toolkit (XTK) is licensed under the MIT License:
* http://www.opensource.org/licenses/mit-license.php
*
* tSNE output as spheres (from Lesson 9)!
*/
-->
<html>
<head>
<meta charset="utf-8">
<title>tSNE Example</title>
<link rel="stylesheet" type="text/css" title="Main" href="demo.css">
<link rel="stylesheet" type="text/css" title="Annotation" href="annstyle.css">
<!-- XTK High speed rendering using Webgl -->
<!--<script type="text/javascript" src="http://get.goXTK.com/xtk_edge.js"></script>-->
<script src="./scripts/X/utils/xtk.js" type="text/javascript" charset="utf-8"></script>
<script src="http://get.goXTK.com/xtk_xdat.gui.js" type="text/javascript"></script>
<!-- for 2D - several options : -->
<!-- XTK - can't get selection to work in 2D-->
<!-- d3 is cool but SVG is too slow for >= 10,000 points -->
<script src="http://d3js.org/d3.v3.js"></script>
<!-- Try RGraph - HTML5 Canvas based -->
<!-- <script src="./scripts/RGraph/libraries/RGraph.common.core.js" ></script>
<script src="./scripts/RGraph/libraries/RGraph.common.dynamic.js" ></script>
<script src="./scripts/RGraph/libraries/RGraph.common.tooltips.js" ></script>
<script src="./scripts/RGraph/libraries/RGraph.scatter.js" ></script> -->
<!-- Using webix for the cool treetable control - created a skinned version at http://webix.com/skin-builder/-->
<!--script src="./scripts/webix/codebase/webix.js" type="text/javascript" charset="utf-8"></script-->
<script src="./scripts/webix/webix.js" type="text/javascript" charset="utf-8"></script>
<link rel="stylesheet" href="./scripts/webix/webix.css" type="text/css" charset="utf-8">
<!-- For building a kdtree for point searches-->
<script src="./scripts/kdTree.js" type="text/javascript" charset="utf-8"></script>
<script src="https://ajax.googleapis.com/ajax/libs/jquery/2.0.0/jquery.min.js"></script>
<!-- The main JS file -->
<script type="text/javascript" src="demo_seperate_objects.js"></script>
<style type="text/css">
.checked{
color:black;
font-weight: bold; cursor:pointer;
}
.unchecked{
color:black;
font-weight:normal; cursor: pointer;
}
</style>
</head>
<body class="master-layout">
<header class="title" id="title">
</header>
<div id="control_gui_container"/>
<div id="loading">
<h1 class="onair" id="loading_prompt">Please load a map...</h1>
<div class="loader-bg boxair"></div>
</div>
<div class="main">
<div class="content_left" id="3DtsneMap" ></div>
<div class="content_right_visible" id="AtlasOntology"></div>
<div class="content_right_hidden" id="BrainLocator"></div>
<!-- clear needed otherwise the footer floats -->
</div>
<footer class="credits">
<div class="footer_right">
<p>
Built using <a style="color:cyan" href="https://github.com/xtk/X">XTK*</a> and <a style="color:cyan" href="http://webix.com/">webix#</a> by <a style="color:cyan" href="mailto:[email protected]">B. van Lew </a>
</p>
<p style="font-size:xx-small">
* The X Toolkit: WebGL™ for Scientific Visualization
</p>
<p style="font-size:xx-small">
# Under GPL
</p>
</div>
<div class="footer_left">
<p>Tips:</p>
<ol type="1" style="font-size:small">
<li><b>First load a tSNE map</b></li>
<li>You can select structures in the tSNE map or the ontology</li>
<li>Hovering over the tSNE the ontology labels will be visible</li>
<li>Right-mouse click on the tSNE map to select all related voxels</li>
<li>In the ontology both tree or single selection is supported</li>
</ol>
</div>
</footer>
</body>
</html>