The folder contains the structural alignments for each Rfam family. The structural alignments are expressed with different encodings, and obtained by removing redundant primary sequences up to 50%, 62% or 90% of similarity for each Rfam seed alignment.
In particular, the folder:
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bear_new_alignment_bear_50 contains the structural alignment expressed with the BEAR encoding, and obtained by removing redundant primary sequences up to 50% of similarity for each Rfam seed alignment.
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bear_new_alignment_bear_62 contains the structural alignment expressed with the BEAR encoding, and obtained by removing redundant primary sequences up to 62% of similarity for each Rfam seed alignment.
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bear_new_alignment_bear_90 contains the structural alignment expressed with the BEAR encoding, and obtained by removing redundant primary sequences up to 90% of similarity for each Rfam seed alignment.
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bear_new_alignment_qbear_50 contains the structural alignment expressed with the qBEAR encoding, and obtained by removing redundant primary sequences up to 50% of similarity for each Rfam seed alignment.
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bear_new_alignment_qbear_62 contains the structural alignment expressed with the qBEAR encoding, and obtained by removing redundant primary sequences up to 62% of similarity for each Rfam seed alignment.
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bear_new_alignment_qbear_90 contains the structural alignment expressed with the qBEAR encoding, and obtained by removing redundant primary sequences up to 90% of similarity for each Rfam seed alignment.
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bear_new_alignment_zbear_50 contains the structural alignment expressed with the zBEAR encoding, and obtained by removing redundant primary sequences up to 50% of similarity for each Rfam seed alignment.
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bear_new_alignment_zbear_62 contains the structural alignment expressed with the zBEAR encoding, and obtained by removing redundant primary sequences up to 62% of similarity for each Rfam seed alignment.
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bear_new_alignment_zbear_90 contains the structural alignment expressed with the zBEAR encoding, and obtained by removing redundant primary sequences up to 90% of similarity for each Rfam seed alignment.