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vcflib requires fastahack #52603

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tolot27 opened this issue Dec 5, 2024 · 0 comments
Open

vcflib requires fastahack #52603

tolot27 opened this issue Dec 5, 2024 · 0 comments

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@tolot27
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tolot27 commented Dec 5, 2024

The vcflib tool vcfvarstats needs fastahack which is contained in contrib/fastahack but not correctly linked in the conda version of vcflib.

How to reproduce:

conda create -n mwe_vcflib vcflib
conda activate mwe_vcflib
vcfvarstats --help

Error:
open2: exec of fastahack -c --help failed: No such file or directory at /tmp/miniconda3/envs/mwe_vcflib/bin/vcfvarstats line 15.

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