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Hi everyone,
Looks like there is still a problem with Java because when I try to process a fastqc into my env conda I have this error :
Failed to process file sample1_R1_001.fastq.gz
java.lang.RuntimeException: Fontconfig head is null, check your fonts or fonts configuration
at java.desktop/sun.awt.FontConfiguration.getVersion(FontConfiguration.java:1263)
at java.desktop/sun.awt.FontConfiguration.readFontConfigFile(FontConfiguration.java:221)
at java.desktop/sun.awt.FontConfiguration.init(FontConfiguration.java:105)
at java.desktop/sun.awt.X11FontManager.createFontConfiguration(X11FontManager.java:696)
at java.desktop/sun.font.SunFontManager$2.run(SunFontManager.java:352)
at java.desktop/sun.font.SunFontManager$2.run(SunFontManager.java:309)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:319)
at java.desktop/sun.font.SunFontManager.<init>(SunFontManager.java:309)
at java.desktop/sun.awt.FcFontManager.<init>(FcFontManager.java:35)
at java.desktop/sun.awt.X11FontManager.<init>(X11FontManager.java:55)
at java.desktop/sun.font.PlatformFontInfo.createFontManager(PlatformFontInfo.java:37)
at java.desktop/sun.font.FontManagerFactory.getInstance(FontManagerFactory.java:51)
at java.desktop/sun.font.SunFontManager.getInstance(SunFontManager.java:242)
at java.desktop/sun.font.FontDesignMetrics.getMetrics(FontDesignMetrics.java:260)
at java.desktop/sun.java2d.SunGraphics2D.getFontMetrics(SunGraphics2D.java:862)
at uk.ac.babraham.FastQC.Graphs.QualityBoxPlot.paint(QualityBoxPlot.java:88)
at java.desktop/javax.swing.JComponent.print(JComponent.java:1274)
at uk.ac.babraham.FastQC.Modules.AbstractQCModule.writeDefaultImage(AbstractQCModule.java:68)
at uk.ac.babraham.FastQC.Modules.PerBaseQualityScores.makeReport(PerBaseQualityScores.java:199)
at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:131)
at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
at java.base/java.lang.Thread.run(Thread.java:1583)
Hi everyone,
Looks like there is still a problem with Java because when I try to process a fastqc into my env conda I have this error :
I have those library in my env conda
Thank you for your help
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