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rsem-run-ebseq (RSEM 1.3.3 recipe) - bioconda package errors due to bioconductor-ebseq=2.0.0 as default dependency #52426

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gkoczyk opened this issue Nov 27, 2024 · 0 comments

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@gkoczyk
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gkoczyk commented Nov 27, 2024

Summary: Change in EbSeq (dependency: bioconductor-ebseq 2.0.0) breaks rsem-run-ebseq on default installs. Works nicely when compiled from cloned source (with archived EbSeq version), or manually downgrading bioconductor-ebseq to 1.40.

Description: Running any matrix/conditions results in:
Error in data.frame(..., check.names = FALSE) :
arguments imply differing number of rows: 21286, 0
Calls: cbind -> cbind -> data.frame
Execution halted

Solution: change recipe to indicate EbSeq version 1.40 as latest compatible.

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