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No recent version of ensembl-vep is installable with pyarrow (from conda-forge) #51880

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gernophil opened this issue Nov 2, 2024 · 1 comment

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@gernophil
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gernophil commented Nov 2, 2024

If I run mamba create -n test pyarrow ensembl-vep on our HPC (CentOS) this lead to ensembl-vep=88.9=1. If I run it on my Mac ensembl-vep=113.0=pl5321h2a3209d_0 is installed. I am trying to unravel the dependencies, but I haven't figured out the issue yet. First thing I recognized is that on CentOS pyarrow 18.0.0 gets installed whereas it's 16.1.0 on my Mac. Without pyarrow, I can install ensembl-vep=113.0 on the HPC.

EDIT: mamba create -n test pyarrow=16.1.0 ensembl-vep doesn't change anything.

@gernophil
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I can fix it by using mamba create -n test pyarrow "ensembl-vep>=112", but the main issue persists, the newest pyarrow cannot be installed with the newest ensembl-vep.

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