From 39847e9e61aa0549fe4682b410b81d5befaafaeb Mon Sep 17 00:00:00 2001
From: Habib-human <86194893+Habib-human@users.noreply.github.com>
Date: Fri, 3 Jan 2025 02:55:23 -0500
Subject: [PATCH] Add plasann recipe (#53008)

* Add plasann recipe

* Fix bioconda lint issues: replace matplotlib with matplotlib-base

* Remove sha256 hash for local build

* Update meta.yaml with source URL and SHA256

* Update meta.yaml with source URL and SHA256

* Fix sha256

* Add license_file

* Add prodigal and blast to the `run` requirements

---------

Co-authored-by: Martin Grigorov <martin-g@users.noreply.github.com>
---
 recipes/plasann/meta.yaml | 54 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 54 insertions(+)
 create mode 100644 recipes/plasann/meta.yaml

diff --git a/recipes/plasann/meta.yaml b/recipes/plasann/meta.yaml
new file mode 100644
index 0000000000000..ce8c23293085a
--- /dev/null
+++ b/recipes/plasann/meta.yaml
@@ -0,0 +1,54 @@
+{% set name = "PlasAnn" %}
+{% set version = "1.0.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/ajlopatkin/PlasAnn/archive/refs/tags/V1.0.1.tar.gz
+  sha256: 9fbb99d6cad1d337fa001616b1844e88204e996df9e621c3d47853ee4a3a2592
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed .
+  entry_points:
+    - PlasAnn = plasann.annotate_plasmid:main
+  run_exports:
+    - {{ pin_subpackage('plasann', max_pin='x.x') }}
+
+requirements:
+  host:
+    - python >=3.7
+    - pip
+    - setuptools
+  run:
+    - python >=3.7
+    - pandas
+    - matplotlib-base
+    - pycirclize
+    - biopython
+    - gdown
+    - prodigal # [not arm64]
+    - blast # [not arm64]
+
+test:
+  commands:
+    - PlasAnn --help
+
+about:
+  home: https://github.com/ajlopatkin/PlasAnn
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: 'A tool for plasmid annotation and visualization'
+  description: |
+    PlasAnn is a tool for plasmid annotation and visualization.
+    
+    For Mac (Apple Silicon) users, please install these additional dependencies:
+    - brew install prodigal
+    - brew install blast
+
+extra:
+  recipe-maintainers:
+    - habib-human