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Hello
I would like to use PropaNet in my project. I am working on gene expression based time series data. Based on the instruction, installed python2.7 with all required libraries such as networkx,multiprocessing and scipy.stats. As a test run, preferred to work with example data. But during test run, I am getting only PropaNet.nwk.t* and PropaNet.DEGli.t* files but ranked files are missing and not able to get the final network. Detail error information is given below:
network done
('TF length', 1717)
Traceback (most recent call last):
File "Target_genes.py", line 83, in
with open(args.DEGfile) as f, open(args.TFfile) as f2:
IOError: [Errno 2] No such file or directory: 'result/intermediate_results/PropaNet.TF_rank.t1.trim'
Traceback (most recent call last):
File "Target_genes.py", line 83, in
with open(args.DEGfile) as f, open(args.TFfile) as f2:
IOError: [Errno 2] No such file or directory: 'result/intermediate_results/PropaNet.TF_rank.t2.trim'
Traceback (most recent call last):
File "Target_genes.py", line 83, in
with open(args.DEGfile) as f, open(args.TFfile) as f2:
IOError: [Errno 2] No such file or directory: 'result/intermediate_results/PropaNet.TF_rank.t3.trim'
Traceback (most recent call last):
File "Target_genes.py", line 83, in
with open(args.DEGfile) as f, open(args.TFfile) as f2:
IOError: [Errno 2] No such file or directory: 'result/intermediate_results/PropaNet.TF_rank.t4.trim'
Please help me to sort this issue.
The text was updated successfully, but these errors were encountered:
Hello,
I have had the same problem running PropaNet with the example. It is similar to what happened to archanabhardwa
I put my error:
bash run.sh [10:35]
network done
('TF length', 1717)
Traceback (most recent call last):
File "Target_genes.py", line 83, in
with open(args.DEGfile) as f, open(args.TFfile) as f2:
IOError: [Errno 2] No such file or directory: 'result/intermediate_results/PropaNet.TF_rank.t2.trim'
Traceback (most recent call last):
File "Target_genes.py", line 83, in
with open(args.DEGfile) as f, open(args.TFfile) as f2:
IOError: [Errno 2] No such file or directory: 'result/intermediate_results/PropaNet.TF_rank.t1.trim'
Traceback (most recent call last):
File "Target_genes.py", line 83, in
with open(args.DEGfile) as f, open(args.TFfile) as f2:
IOError: [Errno 2] No such file or directory: 'result/intermediate_results/PropaNet.TF_rank.t3.trim'
Traceback (most recent call last):
File "Target_genes.py", line 83, in
with open(args.DEGfile) as f, open(args.TFfile) as f2:
IOError: [Errno 2] No such file or directory: 'result/intermediate_results/PropaNet.TF_rank.t4.trim'
Could you tell me how to solve it?
I work with Ubuntu 14. thanks
Hello
I would like to use PropaNet in my project. I am working on gene expression based time series data. Based on the instruction, installed python2.7 with all required libraries such as networkx,multiprocessing and scipy.stats. As a test run, preferred to work with example data. But during test run, I am getting only PropaNet.nwk.t* and PropaNet.DEGli.t* files but ranked files are missing and not able to get the final network. Detail error information is given below:
network done
('TF length', 1717)
Traceback (most recent call last):
File "Target_genes.py", line 83, in
with open(args.DEGfile) as f, open(args.TFfile) as f2:
IOError: [Errno 2] No such file or directory: 'result/intermediate_results/PropaNet.TF_rank.t1.trim'
Traceback (most recent call last):
File "Target_genes.py", line 83, in
with open(args.DEGfile) as f, open(args.TFfile) as f2:
IOError: [Errno 2] No such file or directory: 'result/intermediate_results/PropaNet.TF_rank.t2.trim'
Traceback (most recent call last):
File "Target_genes.py", line 83, in
with open(args.DEGfile) as f, open(args.TFfile) as f2:
IOError: [Errno 2] No such file or directory: 'result/intermediate_results/PropaNet.TF_rank.t3.trim'
Traceback (most recent call last):
File "Target_genes.py", line 83, in
with open(args.DEGfile) as f, open(args.TFfile) as f2:
IOError: [Errno 2] No such file or directory: 'result/intermediate_results/PropaNet.TF_rank.t4.trim'
Please help me to sort this issue.
The text was updated successfully, but these errors were encountered: