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Staphtyper module compilation error #503
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Hello, after successfully processing all my samples I have been trying to use the staphtyper workflow. Each time I come across this error. I can't seem to figure out what is causing the unexpected input, could my file structure be part of the issue?
N E X T F L O W ~ version 23.10.1
Launching
/home/grege/anaconda3/envs/bactopia-dev/share/bactopia-3.0.2/main.nf
[distracted_ptolemy] DSL2 - revision: 0cd9f79ba7ERROR ~ Module compilation error
} else if (extension == 'fna_faa') {
^
1 error
-- Check script 'anaconda3/envs/bactopia-dev/share/bactopia-3.0.2/./workflows/bactopia-tools.nf' at line: 9 or see '.nextflow.log' file for more details
Here is the nextflow log file
.nextflow.log
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