-
Notifications
You must be signed in to change notification settings - Fork 24
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Recycling sc models #29
Comments
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
The
--sc_model
option hints that it might be possible to 'recycle' an sc model that has already been fitted in a previousrun
. Is this the case? If so, how?I've tried specifying an
sc_model*.pt
file with this option and no other--sc_*
options, butstereoscope run
complains about a missing--sc_cnt
file.When I add in the sc count file etc, the model loads but then soon crashes because of a shape mismatch. Note that I didn't create the model, but I suspect that the input sc data was reshaped with
--sc_upper_bound
and maybe--gene_list
too.Basically, I just want to apply the model -- I'm not interested in refining it with more epochs. I guess this may be difficult without knowing the full life history of the model? But what combination of options/files would I need in order to recycle one of my own models?
Thanks!
The text was updated successfully, but these errors were encountered: