Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Pathway Bar plots should be able to select arbitrary gene sets #1

Open
alexlenail opened this issue Sep 14, 2018 · 0 comments
Open
Labels
enhancement New feature or request medium priority

Comments

@alexlenail
Copy link
Owner

In the Braid plot UI, it's possible to choose a gene set, but also individual genes (see second tab)

screen shot 2018-09-14 at 4 29 51 pm

If you choose a gene set, those genes in the set populate the genes tab. You can then add or subtract genes that interest you.

screen shot 2018-09-14 at 4 30 01 pm

I devised this feature after having finished the pathway bar plot.

The bar plot is custom-built for 3 specific datasets:

screen shot 2018-09-14 at 4 31 43 pm

Now that we're "polymorph-izing" pathway bar plots, it makes sense to replace those other tabs with useful functions, assuming a single dataset. The first obvious such tab is "Genes".

  • It should be possible to select an arbitrary gene list and see those genes in the bar plot.
  • It should also be possible to select a pathway and the genes in that pathway show up in the genes tab.
  • Finally, it should be possible to edit those genes in the gene tab that were populated by selecting a pathway.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request medium priority
Projects
None yet
Development

No branches or pull requests

2 participants